prodigy-iaa 0.1.1

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✨ Prodigy - Inter-Annotator Agreement Recipes 🤝

These recipes calculate Inter-Annotator Agreement (aka Inter-Rater Reliability) measures for use with Prodigy. The measures include Percent (Simple) Agreement, Krippendorff's Alpha, and Gwet's AC2. All calculations were derived using the equations in this paper[^1], and this includes tests to match the values given on the datasets referenced in that paper.

Currently this package supports IAA metrics for binary classification, multiclass classification, and multilabel (binary per label) classification. Span-based IAA measures for NER and Span Categorization will be integrated in the future.

Note that you can also use the measures included here w/o directly interfacing with Prodigy, see section on other use cases.

Install

pip install prodigy-iaa

For dev

pip install git+https://github.com/pmbaumgartner/prodigy-iaa

This package uses entry points so you should just be able to install and run the commands below.

Recipes

Recipes depend the source data structure:

• iaa.datasets will calculate measures assuming you have multiple datasets in prodigy, one dataset per annotator
• iaa.sessions will calculate measures assuming you have multiple annotators, identified typically by _session_id, in a single dataset
• iaa.jsonl operates the same as iaa.sessions, but on a file exported to JSONL with prodigy db-out.

ℹ️ Get details on each recipe's arguments with prodigy <recipe> --help

Example

In this toy example, the command calculates agreement using dataset my-dataset, which is a multiclass problem -- meaning it's data is generated using the choice interface, exclusive choices, storing choices in the "accept" key. In this example, there are 5 total examples, 4 of them have co-incident annotations (i.e. any overlap), and 3 unique annotators.

$ prodigy iaa.sessions my-dataset multiclass

ℹ Annotation Statistics

Attribute                      Value
----------------------------   -----
Examples                           5
Categories                         3
Co-Incident Examples*              4
Single Annotation Examples         1
Annotators                         3
Avg. Annotations per Example    2.60

* (>1 annotation)

ℹ Agreement Statistics

Statistic                     Value
--------------------------   ------
Percent (Simple) Agreement   0.4167
Krippendorff's Alpha         0.1809
Gwet's AC2                   0.1640

Validations & Practical Use

All recipes depend on examples being hashed uniquely and stored under _task_hash on the example. There are other validations involved as well:

• Checks if view_id is the same for all examples
• Checks if label is the same for all examples
• Checks that each annotator has not double-annotated the same _task_hash

If any validations fail, or your data is unique in some way, iaa.jsonl is the recipe you want. Export your data, identify any issues and remedy them, and then calculate your measures on the cleaned exported data.

Theory

There is no single measure across all datasets to give a reasonable measurement of agreement - often times the measures are conditional on qualities of the data. The metrics included in these recipes have nice properties that make them flexible to various annotation situations: they can handle missing values (i.e. incomplete overlap), scale to any number of annotators, scale to any number of categories, and can be customized with your own weighting functions. In addition, the choice of metrics available within this package follow the recommendations in the literature[^2][^3], plus theoretical analysis[^4] demonstrating when certain metrics might be most useful.

Table 13 in this paper[^4] highlights systematic issues with each metric. They are as follows:

• When there is low agreement: Percent (Simple) Agreement can produce high scores.
  • Imagine a binary classification problem with a very low base rate. Annotators can often agree on the negative case, but rarely agree on the positive.
• When there are highly uneven sizes of categories: AC2 can produce low scores, Alpha can produce high scores.
• When there are N < 20 co-incident annotated examples: Alpha can produce high scores.
  • You probably shouldn't trust N < 100 generally.
• When there are 3 or more categories: AC2 can produce high scores.

Summary: Use simple agreement and Alpha. If simple agreement is high, and Alpha is low, verify with AC2[^3]. In general these numbers correlate, if you're getting contradictory or unclear information increase the number of examples and explore your data.

Other Use-Cases / Use Outside Prodigy

If you want to calculate these measures in a custom script on your own data, you can use from prodigy_iaa.measures import calculate_agreement. See tests in tests/test_measures.py for an example. The docstrings for each function should indicate the expected data structures.

You could also use this, for example, to print out some nice output during an update callback and get annotation statistics as each user submits examples.

If you want to calcualte more precise statistics, e.g. comparing two annotators pairwise, you could write a script to do that as well with these existing functions.

Tests

Tests require a working version of prodigy, so they are not run in CI and must be run locally.

References

[^1]: K. L. Gwet, “On Krippendorff’s Alpha Coefficient,” p. 16, 2015. [^2]: J. Lovejoy, B. R. Watson, S. Lacy, and D. Riffe, “Three Decades of Reliability in Communication Content Analyses: Reporting of Reliability Statistics and Coefficient Levels in Three Top Journals,” p. 44. [^3]: S. Lacy, B. R. Watson, D. Riffe, and J. Lovejoy, “Issues and Best Practices in Content Analysis,” Journalism & Mass Communication Quarterly, vol. 92, no. 4, pp. 791–811, Dec. 2015, doi: 10.1177/1077699015607338. [^4]: X. Zhao, J. S. Liu, and K. Deng, “Assumptions Behind Intercoder Reliability Indices,” Communication Yearbook, p. 83.