projectnameTest 0.1.dev20230214

No project description provided

Test runs

Run python tests locally in the build folder

Not installed depencencies

Inside the docker container of 2.9 Link the dune modules are not installed, since DUNECI_INSTALL_STAGE is not set to 1, see Link

Running the python tests of projectnameTest fails using the following commands. (To get this working i had to set set (CMAKE_PREFIX_PATH "/duneci/modules/dune-common/build-cmake") in the toplevel CMakeLists.txt)

docker container run -it --entrypoint /bin/bash registry.dune-project.org/docker/ci/dune:2.9
git clone https://gitlab.dune-project.org/alexander.mueller/testpythonbindings.git
cd testpythonbindings/
dunecontrol --only=projectnameTest all
cd build-cmake
ctest --verbose

test1.py and test2.py fails with:

 ValueError: Key INSTALL_PREFIX is expected to be unique across the given metadata. Got {'/usr/local', '/duneci/install'}

Full test results

duneci@e7fac7d916b9:~/testpythonbindings/build-cmake$ ctest --verbose
UpdateCTestConfiguration  from :/duneci/testpythonbindings/build-cmake/DartConfiguration.tcl
Parse Config file:/duneci/testpythonbindings/build-cmake/DartConfiguration.tcl
UpdateCTestConfiguration  from :/duneci/testpythonbindings/build-cmake/DartConfiguration.tcl
Parse Config file:/duneci/testpythonbindings/build-cmake/DartConfiguration.tcl
Test project /duneci/testpythonbindings/build-cmake
Constructing a list of tests
Done constructing a list of tests
Updating test list for fixtures
Added 0 tests to meet fixture requirements
Checking test dependency graph...
Checking test dependency graph end
test 1
Start 1: pytest1

1: Test command: /duneci/testpythonbindings/build-cmake/run-in-dune-env "python" "test1.py"
1: Test timeout computed to be: 3600
1: Comparing build directories of installed dune modules with given build directories
1: DUNE-INFO: Generating dune-py module in /duneci/modules/dune-common/build-cmake/dune-env/.cache/dune-py
1: Help on package projectnameTest:
1:
1: NAME
1:     projectnameTest
1:
1: DESCRIPTION
1:     # SPDX-FileCopyrightText: Copyright © DUNE Project contributors, see file LICENSE.md in module root
1:     # SPDX-License-Identifier: LicenseRef-GPL-2.0-only-with-DUNE-exception
1:
1: PACKAGE CONTENTS
1:     _projectnameTest
1:
1: FUNCTIONS
1:     add(...) method of builtins.PyCapsule instance
1:         add(i: int, j: int) -> int
1:         
1:         A function which adds two numbers
1:
1: FILE
1:     /duneci/testpythonbindings/build-cmake/python/projectnameTest/__init__.py
1:
1:
1: Traceback (most recent call last):
1:   File "/duneci/modules/dune-common/build-cmake/python/dune/common/__init__.py", line 86, in FieldVector
1:     return globals()[fv](values)
1: KeyError: 'FieldVector_3'
1:
1: During handling of the above exception, another exception occurred:
1:
1: Traceback (most recent call last):
1:   File "/duneci/testpythonbindings/projectnameTest/python/test/test1.py", line 17, in <module>
1:     v = FieldVector([0, 1, 2])
1:   File "/duneci/modules/dune-common/build-cmake/python/dune/common/__init__.py", line 90, in FieldVector
1:     cls = _loadVec(includes, typeName).FieldVector
1:   File "/duneci/modules/dune-common/build-cmake/python/dune/common/__init__.py", line 74, in _loadVec
1:     return generator.load(
1:   File "/duneci/modules/dune-common/build-cmake/python/dune/generator/generator.py", line 172, in load
1:     return self.post(moduleName, source, postscript, extraCMake)
1:   File "/duneci/modules/dune-common/build-cmake/python/dune/generator/generator.py", line 124, in post
1:     module = builder.load(moduleName, source, self.typeName[0], extraCMake)
1:   File "/duneci/modules/dune-common/build-cmake/python/dune/generator/cmakebuilder.py", line 374, in load
1:     self.initialize()
1:   File "/duneci/modules/dune-common/build-cmake/python/dune/generator/cmakebuilder.py", line 616, in initialize
1:     super().initialize()
1:   File "/duneci/modules/dune-common/build-cmake/python/dune/generator/cmakebuilder.py", line 213, in initialize
1:     self.build_dunepy_from_template(self.dune_py_dir)
1:   File "/duneci/modules/dune-common/build-cmake/python/dune/generator/cmakebuilder.py", line 448, in build_dunepy_from_template
1:     force = Builder.generate_dunepy_from_template(dunepy_dir, force=force)
1:   File "/duneci/modules/dune-common/build-cmake/python/dune/generator/cmakebuilder.py", line 121, in generate_dunepy_from_template
1:     context["install_prefix"] = metaData.unique_value_across_modules("INSTALL_PREFIX")
1:   File "/duneci/modules/dune-common/build-cmake/python/dune/packagemetadata.py", line 496, in unique_value_across_modules
1:     raise ValueError(f"Key {key} is expected to be unique across the given metadata. Got {values}")
1: ValueError: Key INSTALL_PREFIX is expected to be unique across the given metadata. Got {'/usr/local', '/duneci/install'}
1/2 Test #1: pytest1 ..........................***Failed    0.59 sec
test 2
Start 2: pytest2

2: Test command: /duneci/testpythonbindings/build-cmake/run-in-dune-env "python" "test2.py"
2: Test timeout computed to be: 3600
2: Comparing build directories of installed dune modules with given build directories
2: DUNE-INFO: Generating dune-py module in /duneci/modules/dune-common/build-cmake/dune-env/.cache/dune-py
2: Traceback (most recent call last):
2:   File "/duneci/testpythonbindings/projectnameTest/python/test/test2.py", line 20, in <module>
2:     grid = dune.grid.structuredGrid(lowerLeft,upperRight,elements)
2:   File "/duneci/modules/dune-grid/build-cmake/python/dune/grid/core.py", line 13, in structuredGrid
2:     return yaspGrid(domain, dimgrid=len(lower), coordinates="equidistantoffset")
2:   File "/duneci/modules/dune-grid/build-cmake/python/dune/grid/_grids.py", line 253, in yaspGrid
2:     constructor = equidistantOffsetCoordinates(
2:   File "/duneci/modules/dune-grid/build-cmake/python/dune/grid/_grids.py", line 165, in equidistantOffsetCoordinates
2:     mod = moduleYaspCoordinates(dim,ctype)
2:   File "/duneci/modules/dune-grid/build-cmake/python/dune/grid/_grids.py", line 159, in moduleYaspCoordinates
2:     module = builder.load(moduleName, source, "yasp coordinates dim={dim} ctype={ct}".format(ct = ctype, dim = dim))
2:   File "/duneci/modules/dune-common/build-cmake/python/dune/generator/cmakebuilder.py", line 374, in load
2:     self.initialize()
2:   File "/duneci/modules/dune-common/build-cmake/python/dune/generator/cmakebuilder.py", line 616, in initialize
2:     super().initialize()
2:   File "/duneci/modules/dune-common/build-cmake/python/dune/generator/cmakebuilder.py", line 213, in initialize
2:     self.build_dunepy_from_template(self.dune_py_dir)
2:   File "/duneci/modules/dune-common/build-cmake/python/dune/generator/cmakebuilder.py", line 448, in build_dunepy_from_template
2:     force = Builder.generate_dunepy_from_template(dunepy_dir, force=force)
2:   File "/duneci/modules/dune-common/build-cmake/python/dune/generator/cmakebuilder.py", line 121, in generate_dunepy_from_template
2:     context["install_prefix"] = metaData.unique_value_across_modules("INSTALL_PREFIX")
2:   File "/duneci/modules/dune-common/build-cmake/python/dune/packagemetadata.py", line 496, in unique_value_across_modules
2:     raise ValueError(f"Key {key} is expected to be unique across the given metadata. Got {values}")
2: ValueError: Key INSTALL_PREFIX is expected to be unique across the given metadata. Got {'/usr/local', '/duneci/install'}
2/2 Test #2: pytest2 ..........................***Failed    0.60 sec

0% tests passed, 2 tests failed out of 2

Label Time Summary:
python    =   1.19 sec*proc (2 tests)
quick     =   1.19 sec*proc (2 tests)

Total Test time (real) =   1.19 sec

The following tests FAILED:
1 - pytest1 (Failed)
2 - pytest2 (Failed)
Errors while running CTest

Installed

We use the same container but install the modules as similar? to https://gitlab.dune-project.org/docker/ci/-/blob/master/base-common/duneci-install-module#L118-L119. (To get this working i had to set set (CMAKE_PREFIX_PATH "/duneci/install/lib/cmake/dune-common") in the toplevel CMakeLists.txt) and removing the modules folder afterwards yields with the following commands

docker container run -it --entrypoint /bin/bash registry.dune-project.org/docker/ci/dune:2.9
cd modules/
dunecontrol  --only=dune-common make install
cd ..
rm -rf modules/
git clone https://gitlab.dune-project.org/alexander.mueller/testpythonbindings.git
cd testpythonbindings/
/duneci/install/bin/dunecontrol --only=projectnameTest all

the following error

ERROR: The path "/duneci/modules" given in DUNE_CONTROL_PATH does not exist.
Execution of dunecontrol terminated due to errors!

I suppose this is on purpose but why is the installation performed into the folder /duneci/install/binand not into /usr/bin or usr/local/bin? Somehow the installed dune-common should not depend on the downloaded build folder? But my Linux knowledge is not good enough here, maybe.

Test with homegrown MWE docker container

For the container see DockerImages/DockerFile **test1.py and test2.py fails with:

docker container run -it --entrypoint /bin/bash rath3t/dunepythonbindings:installedmodules
git clone https://gitlab.dune-project.org/alexander.mueller/testpythonbindings.git
cd testpythonbindings/
dunecontrol --only=projectnameTest all
cd build-cmake
ctest --verbose

build dir /usr/local/lib/cmake/dune-common for module dune-common is expected to be unique across the given metadata - found /dune/dune-common/build-cmake
2: Dune python package could not be found.

Full test results

root@e4f98ef9aa1e:/testpythonbindings/build-cmake# ctest --verbose
UpdateCTestConfiguration  from :/testpythonbindings/build-cmake/DartConfiguration.tcl
Parse Config file:/testpythonbindings/build-cmake/DartConfiguration.tcl
UpdateCTestConfiguration  from :/testpythonbindings/build-cmake/DartConfiguration.tcl
Parse Config file:/testpythonbindings/build-cmake/DartConfiguration.tcl
Test project /testpythonbindings/build-cmake
Constructing a list of tests
Done constructing a list of tests
Updating test list for fixtures
Added 0 tests to meet fixture requirements
Checking test dependency graph...
Checking test dependency graph end
test 1
    Start 1: pytest1

1: Test command: /testpythonbindings/build-cmake/run-in-dune-env "python" "test1.py"
1: Test timeout computed to be: 3600
1: Comparing build directories of installed dune modules with given build directories
1: build dir /usr/local/lib/cmake/dune-common for module dune-common is expected to be unique across the given metadata - found /dune/dune-common/build-cmake
1: Dune python package could not be found.
1/2 Test #1: pytest1 ..........................***Skipped   0.10 sec
test 2
    Start 2: pytest2

2: Test command: /testpythonbindings/build-cmake/run-in-dune-env "python" "test2.py"
2: Test timeout computed to be: 3600
2: Comparing build directories of installed dune modules with given build directories
2: build dir /usr/local/lib/cmake/dune-common for module dune-common is expected to be unique across the given metadata - found /dune/dune-common/build-cmake
2: Dune python package could not be found.
2/2 Test #2: pytest2 ..........................***Skipped   0.10 sec

100% tests passed, 0 tests failed out of 2

Label Time Summary:
python    =   0.20 sec*proc (2 tests)
quick     =   0.20 sec*proc (2 tests)

Total Test time (real) =   0.20 sec

The following tests did not run:
          1 - pytest1 (Skipped)
          2 - pytest2 (Skipped)

Not removing the dune folder where dune-common is downloaded (commenting RUN rm -rf dune/) in DockerImages/DockerFile yields the same error.

It can be used via the docker image rath3t/dunepythonbindings: installedmodulesNotDeletedBuildDir.

Questions

Not installed python tests

• Is this repository almost setup correctly in terms of python bindings? I got inspired by dumux, since I also want to have a module with its own namespace.
• Why does the above tests complain with a reference to /dune/dune-common/build-cmake even when the module is installed and this folder is removed?
• How to run the python tests correctly without installing the module projectnameTest?
  • What needs to be present and how (installed dependencies) to circumvent the errors from above?
  • Is there a magic combination of running these targets? build_tests projectnameTest _projectnameTest test_python build_python_tests I consider metadata_install_python_package_dune,install_python_package_dune,install_python as not needed for this question. Just from the naming they are use by installing the package

Installing the local python module to run python tests with installed module

How should the module be installed: From dune-project.org/dev/adding_python pip install -v --pre --log logfile --find-links file://$PWD/dist packagename==0.1 or using metadata_install_python_package_dune,install_python_package_dune,install_python in some cobination.

Can I then copy the test above test1.py and test2.py somewhere and then can I test it with python test1.py or does this still happen inside the venv and I have to write run-in-dune-env python test1.py? But where should the file run-in-dune-env be in this case, since all build directories are potentially deleted?

git-045b90667d172f1b92a5178ffaff13cef28ba463