Extract promoter sequence for biologists
Project description
# Overview
The promoterExtract is python package for bioinformatics. Argument -l means the length of promoter, int type. Argument -u utr5 after TSS, int type. Argument -f reference genome fasta of a specific organism. Argument -g annotation file including GTF and GFF. Argument -o means output file path.
## Brief introduction of format package
- Install <br>
`bash pip install promoterExtract # other git clone https://github.com/SitaoZ/promoterExtract.git cd promoterExtract; python setup.py install `
- Usage <br>
`bash which get_promoter get_promoter -h get_promoter -l 200 -u 100 -f ath.fa -g ath.gff3 -o promoter.csv `
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