promoterExtract 0.9.2

Extract promoter sequence for biologists

# Overview

The promoterExtract is python package for bioinformatics. Argument -l means the length of promoter, int type. Argument -u utr5 after TSS, int type. Argument -f reference genome fasta of a specific organism. Argument -g annotation file including GTF and GFF. Argument -o means output file path.

## Brief introduction of format package

1. Install <br>

   `bash pip install promoterExtract # other git clone https://github.com/SitaoZ/promoterExtract.git cd promoterExtract; python setup.py install `

2. Usage <br>

   `bash which get_promoter get_promoter -h `

   `bash get_promoter -l 200 -u 100 -f ath.fa -g ath.gff3 -o promoter.csv `