proteoformquant 0.2

A python command line tool for the quantification of peptidoform/proteoforms

Proteoformquant

Proteoformquant is a Python tool for quantitative analysis of proteoforms from mass spectrometry data.

Setup/Installation

To use Proteoformquant, you need to create a new Conda environment using Mamba package manager.

1. Install Mamba

Mamba is a fast package manager for Conda environments. You can install it using Conda itself by running the following command:

Proteoformquant

Proteoformquant is a Python tool for quantitative analysis of proteoforms from mass spectrometry data.

Setup/Installation

To use Proteoformuant, you can create a Conda environment using the provided 'environment.yml' file. This can be done using Conda directly, however we recommend using the Mamba package manager.

1. Install Conda (and Mamba)

If not already done, install Conda (https://docs.conda.io/projects/conda/en/stable/user-guide/install/index.html#regular-installation)

If you wish to use Manda to create the Conda environment (faster) you can install mamba by running the following command in a terminal:

conda install mamba -n base -c conda-forge

2. Install Conda (and Mamba)

Next, create the environment using either Conda or Mamba by running the following command in the folder

# With Conda
conda env create --file environment.yml
#With Manba
mamba env create --file environment.yml

Usage

Contributing

License