A Python package for extracting protein sequence features
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protlearn is a Python package for the feature extraction of amino acid sequences. It is comprised of three stages - preprocessing, feature computation, and subsequent dimensionality reduction. Currently, the package is being maintained for Python versions 3.6, 3.7, and 3.8.

Overview

For more information on how to use it, please refer to the documentation.

Installation

Dependencies

  • NumPy
  • Pandas
  • scikit-learn
  • xgboost
  • mlxtend
  • biopython

User Installation

PyPI

You can install protlearn with pip:

$ pip install protlearn

Conda

You can install protlearn with conda:

$ conda install -c conda-forge protlearn

Authors

This package is maintained by Thomas Dorfer.

License

This package is licensed under the MIT License.

Project links

Key dates

PyPI data
Data sourced directly from PyPI's database.
  • Released:
Newer release available (0.0.3)

1 maintainer

PyPI data
Data sourced directly from PyPI's database.
Avatar for thomasdorfer from gravatar.com thomasdorfer

Credits

Author: Thomas Dorfer

License

MIT License (MIT)

Tags

amino acids proteins peptides preprocessing feature engineering dimensionality reduction machine learning

Classifiers

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