Python API for cortex.
Project description
py-cortex-api
Python API for cortex.
Install
pip3 install git+https://github.com/iqbal-lab-org/py-cortex-api
Requirements
sudo apt install r-base-core
Usage
Use a list to pass in reads files, even if there is only one file.
import cortex
cortex.calls("./reference.fasta",
["./reads.fastq"],
"./output",
"sample_name")
Licence
MIT
Project details
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py-cortex-api-1.0.tar.gz
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