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Python API for cortex.

Project description

py-cortex-api

Python API for cortex.

Install

pip3 install git+https://github.com/iqbal-lab-org/py-cortex-api

Requirements

sudo apt install r-base-core

Usage

Use a list to pass in reads files, even if there is only one file.

import cortex
cortex.calls("./reference.fasta",
             ["./reads.fastq"],
             "./output",
             "sample_name")

Licence

MIT

Project details


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