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Seven ECG heartbeat detection algorithms and heartrate variability analysis

Project description

A collection of 7 ECG heartbeat detection algorithms implemented in Python. Developed in conjunction with a new ECG database: This repository also contains a testing class for the MITDB and the new University of Glasgow database. In addition the module hrv provides tools to analyse heartrate variability.


Linux / Mac:

pip3 install py-ecg-detectors [--user]


pip install py-ecg-detectors [--user]

From source:

python3 install [--user]

Use the option –user if you don’t have system-wise write permission.

ECG Detector Class Usage

Before the detectors can be used the class must first be initalised with the sampling rate of the ECG recording:

from ecgdetectors import Detectors
detectors = Detectors(fs)

See for an example of how to use the detectors.


Implementation of P.S. Hamilton, “Open Source ECG Analysis Software Documentation”, E.P.Limited, 2002. Usage:

r_peaks = detectors.hamilton_detector(unfiltered_ecg)


Implementation of Ivaylo I. Christov, “Real time electrocardiogram QRS detection using combined adaptive threshold”, BioMedical Engineering OnLine 2004, vol. 3:28, 2004. Usage:

r_peaks = detectors.christov_detector(unfiltered_ecg)

Engelse and Zeelenberg

Implementation of W. Engelse and C. Zeelenberg, “A single scan algorithm for QRS detection and feature extraction”, IEEE Comp. in Cardiology, vol. 6, pp. 37-42, 1979 with modifications A. Lourenco, H. Silva, P. Leite, R. Lourenco and A. Fred, “Real Time Electrocardiogram Segmentation for Finger Based ECG Biometrics”, BIOSIGNALS 2012, pp. 49-54, 2012. Usage:

r_peaks = detectors.engzee_detector(unfiltered_ecg)

Pan and Tompkins

Implementation of Jiapu Pan and Willis J. Tompkins. “A Real-Time QRS Detection Algorithm”. In: IEEE Transactions on Biomedical Engineering BME-32.3 (1985), pp. 230–236. Usage:

r_peaks = detectors.pan_tompkins_detector(unfiltered_ecg)

Stationary Wavelet Transform

Implementation based on Vignesh Kalidas and Lakshman Tamil. “Real-time QRS detector using Stationary Wavelet Transform for Automated ECG Analysis”. In: 2017 IEEE 17th International Conference on Bioinformatics and Bioengineering (BIBE). Uses the Pan and Tompkins thresolding method. Usage:

r_peaks = detectors.swt_detector(unfiltered_ecg)

Two Moving Average

Implementation of Elgendi, Mohamed & Jonkman, Mirjam & De Boer, Friso. (2010). “Frequency Bands Effects on QRS Detection” The 3rd International Conference on Bio-inspired Systems and Signal Processing (BIOSIGNALS2010). 428-431. Usage:

r_peaks = detectors.two_average_detector(unfiltered_ecg)

Matched Filter

FIR matched filter using template of QRS complex. Uses the Pan and Tompkins thresolding method. The ECG template is a text file where the samples are in a single column. See the templates folder on github for examples. Usage:

r_peaks = detectors.matched_filter_detector(unfiltered_ecg,template_file)

Heartrate variability analysis

The module hrv provides a large collection of heartrate variability measures which are methods of the class HRV:

HR(self, rr_samples)
   Calculate heart-rates from R peak samples.

NN20(self, rr_samples)
   Calculate NN20, the number of pairs of successive
   NNs that differ by more than 20 ms.

NN50(self, rr_samples)
   Calculate NN50, the number of pairs of successive
   NNs that differ by more than 50 ms.

RMSSD(self, rr_samples, normalise=False)
   Calculate RMSSD (root mean square of successive differences).

SDANN(self, rr_samples, average_period=5.0, normalise=False)
   Calculate SDANN, the standard deviation of the average
   RR intervals calculated over short periods.

SDNN(self, rr_samples, normalise=False)
   Calculate SDNN, the standard deviation of NN intervals.

SDSD(self, rr_samples)
   Calculate SDSD (standard deviation of successive differences),
   the standard deviation of the successive differences between adjacent NNs.

fAnalysis(self, rr_samples)
   Frequency analysis to calc self.lf, self.hf,
   returns the LF/HF-ratio.

pNN20(self, rr_samples)
   Calculate pNN20, the proportion of NN20 divided by total number of NNs.

pNN50(self, rr_samples)
   Calculate pNN50, the proportion of NN50 divided by total number of NNs.

For parameters and additional info use the python help function:

import hrv

The example calculates the heartrate variability in the timedomain.

Benchmarking calculates the R peak timestamps for all detectors, the true/false detections/misses and saves them in .csv files. Open the script itself or use python’s help function of how to obtain the ECG data such as the MIT db. takes then the .csv files, displays the results of the different detectors and calculates the stats. performs a timedomain analysis between sitting and a math test using the EngZee detector and the wavelet detector for comparison.


Luis Howell,

Bernd Porr,

citation / DOI

DOI: 10.5281/zenodo.3353396

Project details

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