py-ecg-detectors 0.9.1

Seven ECG heartbeat detection algorithms and timedomain heartrate variability analysis

A collection of 7 ECG heartbeat detection algorithms implemented in Python. Developed in conjunction with a new ECG database: http://researchdata.gla.ac.uk/716/. This repository also contains a testing class for the MITDB and the new University of Glasgow database. In addition the module hrv provides tools to analyse heartrate variability.

ECG Detector Class Usage

Before the detectors can be used the class must first be initalised with the sampling rate of the ECG recording:

from ecgdetectors import Detectors
detectors = Detectors(fs)

See usage_example.py for an example of how to use the detectors.

Hamilton

Implementation of P.S. Hamilton, “Open Source ECG Analysis Software Documentation”, E.P.Limited, 2002. Usage:

r_peaks = detectors.hamilton_detector(unfiltered_ecg)

Christov

Implementation of Ivaylo I. Christov, “Real time electrocardiogram QRS detection using combined adaptive threshold”, BioMedical Engineering OnLine 2004, vol. 3:28, 2004. Usage:

r_peaks = detectors.christov_detector(unfiltered_ecg)

Engelse and Zeelenberg

Implementation of W. Engelse and C. Zeelenberg, “A single scan algorithm for QRS detection and feature extraction”, IEEE Comp. in Cardiology, vol. 6, pp. 37-42, 1979 with modifications A. Lourenco, H. Silva, P. Leite, R. Lourenco and A. Fred, “Real Time Electrocardiogram Segmentation for Finger Based ECG Biometrics”, BIOSIGNALS 2012, pp. 49-54, 2012. Usage:

r_peaks = detectors.engzee_detector(unfiltered_ecg)

Pan and Tompkins

Implementation of Jiapu Pan and Willis J. Tompkins. “A Real-Time QRS Detection Algorithm”. In: IEEE Transactions on Biomedical Engineering BME-32.3 (1985), pp. 230–236. Usage:

r_peaks = detectors.pan_tompkins_detector(unfiltered_ecg)

Stationary Wavelet Transform

Implementation based on Vignesh Kalidas and Lakshman Tamil. “Real-time QRS detector using Stationary Wavelet Transform for Automated ECG Analysis”. In: 2017 IEEE 17th International Conference on Bioinformatics and Bioengineering (BIBE). Uses the Pan and Tompkins thresolding method. Usage:

r_peaks = detectors.swt_detector(unfiltered_ecg)

Two Moving Average

Implementation of Elgendi, Mohamed & Jonkman, Mirjam & De Boer, Friso. (2010). “Frequency Bands Effects on QRS Detection” The 3rd International Conference on Bio-inspired Systems and Signal Processing (BIOSIGNALS2010). 428-431. Usage:

r_peaks = detectors.two_average_detector(unfiltered_ecg)

Matched Filter

FIR matched filter using template of QRS complex. Template provided for 250Hz and 360Hz. Uses the Pan and Tompkins thresolding method. Usage:

r_peaks = detectors.matched_filter_detector(unfiltered_ecg)

Authors

Luis Howell, [e-mail] Bernd Porr, [e-mail]