A software package for molecular PACKing and Motion ANalysis (PACKMAN)
Project description
PACKMAN: PACKing and Motion ANalysis
This package focuses on studying molecular structures and their dynamics using a simple yet informative property known as Protein Packing. Over the last few years, we have worked on several techniques to capture and quantify the protein packing, resulting in a few publications. This package has all the code to repeat and further develop these techniques.
DOCUMENTATION
INSTALLATION
- Installing with pip (Recommended)
pip install py-packman
- Installing from source
git clone https://github.com/Pranavkhade/PACKMAN
cd PACKMAN
python setup.py install
HOW TO USE
PACKMAN, along with its components, can be accessed via Graphical User Interface (GUI), Command-line Interface (CLI), and Application programming interface (API).
For the GUI, please run the following command.
python -m packman gui
OR
python3 -m packman gui
For the CLI and API, please read the tutorials & documentation.
WEB SERVERS
RELATED RESEARCH ARTICLES
ACKNOWLEDGEMENTS
The development of the PACKMAN package is supported by NSF grant DBI 1661391. The authors also thank ResearchIT@Iowa State University for helping with many aspects of computing.
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