pyCDxAnalysis 0.0.30

Integrative tools to anlysis companian diagnosis gene data set.

pyCDxAnalysis

pyCDxAnalysis is a python library to format, filter, analyze and visulize cancer companian diagnosis data in a unifying thread. It provides universal interface to filter samples via a range of condition, and various methods to perform most commonly used analysis in cancer genomics.

Installation

From source code.

$ git clone https://github.com/JaylanLiu/pyCDxAnalysis
$ cd pyCDxAnalysis
$ python setup.py install 

To install the package with pip, run:

pip install pyCDxAnalysis

Example usage

An executable demonstration of the package is available on GitHub as a Jupyter Notebook, https://github.com/JaylanLiu/pyCDxAnalysis/blob/main/pyCDxAnalysis/pyCDxAnalysis_test.ipynb.