Integrative tools to anlysis companian diagnosis gene data set.
Project description
pyCDxAnalysis
pyCDxAnalysis is a python library to format, filter, analyze and visulize cancer companian diagnosis data in a unifying thread. It provides universal interface to filter samples via a range of condition, and various methods to perform most commonly used analysis in cancer genomics.
Installation
From source code.
$ git clone https://github.com/JaylanLiu/pyCDxAnalysis
$ cd pyCDxAnalysis
$ python setup.py install
To install the package with pip, run:
pip install pyCDxAnalysis
Example usage
An executable demonstration of the package is available on GitHub as a Jupyter Notebook, https://github.com/JaylanLiu/pyCDxAnalysis/blob/main/pyCDxAnalysis/pyCDxAnalysis_test.ipynb.
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