pyCapsid 0.0.6

A set of computational tools written in python for the analysis of viral capsids

pyCapsid

Description

A python package for identification of dominant motions and rigid domains of protein shells using Elastic Network Models.

Installation

The package requires python < 3.11, we reccomend python 3.10. Via pip:

pip install pyCapsid

Via conda:

conda install -c colintravisbrown -c conda-forge pycapsid

Documentation

Documentation is provided on our github pages site: https://luquelab.github.io/pyCapsid/

Examples

An example notebook is provided in the notebooks folder. An accompanying tutorial is provided in the documentation.

Project History

This is an evolving repository Started: 2022-10-24

FILES & FOLDERS

FOLDER: /bin --> This folder contains basic scripts and executable files.

FOLDER: /data --> This folder contains the raw data associated with the project and the potential references.

FOLDER: /docs --> This folder contains the manuscript, digital copies of the cited references, figures, and other associated files for publication.

FOLDER: /results --> This folder contains the results, performance analysis, and commented references associated with the project.

FOLDER: /src --> This folder contains source code of the package.

The syntax of markdown files (.md) is CommonMark unless specified otherwise (https://commonmark.org/help/)