pyDOID
Python package with utilities for managing the Human Disease Ontology.
pyDOID was created to provide functionality that is currently unavailable (or difficult to create) in DO.utils the more extensive R package designed with the same purpose.
The functionality provided by pyDOID is encapsulated in three primary classes:
- The
DOrepoclass is designed specifically for access and manipulation of the Disease Ontology's git repository and the files within it.DOrepo:- Inherits from the
git.repo.Repoclass and extends it with methods to check out individual tags, iteratively execute code across a range of tags, and to capture/restore the state of the git repo. - Wraps the
pyDOID.owlclasses (outlined below) for specific files in the repository (owl.functional: doid-edit.owl;owl.xml: doid.owl and doid-merged.owl).
- Inherits from the
- The
owl.functionalclass provides a single method to extract class axioms from OWL files in the functional format. - The
owl.xmlclass provides methods to load and execute SPARQL queries against OWL files in the XML format.
1 maintainer
Metadata
1 maintainer
Release files for pyDOID 0.1.6
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Source distribution (sdist)
| File | Size | Uploaded | Provenance | Actions |
|---|---|---|---|---|
| pyDOID-0.1.6.tar.gz | 5.2 kB | Without provenance | Details for pyDOID-0.1.6.tar.gz |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Actions Reset |
|---|---|---|---|---|
| pyDOID-0.1.6-py3-none-any.whl | Python 3 | none | any | Details for pyDOID-0.1.6-py3-none-any.whl |
Total release size: 11.1 kB
Release files / pyDOID-0.1.6.tar.gz
| Download URL | pyDOID-0.1.6.tar.gz |
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| Size | 5.2 kB |
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Release files / pyDOID-0.1.6-py3-none-any.whl
| Download URL | pyDOID-0.1.6-py3-none-any.whl |
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| Size | 5.9 kB |
| Tags | Python 3 |
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