What is pyEDFlib
pyEDFlib is a python library to read/write EDF+/BDF+ files based on EDFlib.
EDF means European Data Format and was firstly published Kemp1992. In 2003, an improved version of the file protocol named EDF+ has been published and can be found at Kemp2003.
The EDF/EDF+ format saves all data with 16 Bit. The company BioSemi introduced a version which saves all data with 24 Bit.
The definition of the EDF/EDF+/BDF/BDF+ format can be found under edfplus.info.
This Python toolbox is a fork of the toolbox from Christopher Lee-Messer and uses the EDFlib from Teunis van Beelen. The EDFlib is able to read and write EDF/EDF+/BDF/BDF+ files.
Documentation
Documentation is available online at https://pyedflib.readthedocs.io.
Installation
pyEDFlib can be used with Python >=3.7. It depends on the Numpy package. To use the newest source code from git, you have to download the source code. You need a C compiler and a recent version of Cython. Go then to the source directory and type:
python setup.py build python setup.py install
There are binary wheels which can be installed by (use pip3 when available):
pip install pyEDFlib
Users of the Anaconda Python distribution can directly obtain pre-built Windows, Intel Linux or macOS / OSX binaries from the conda-forge channel. This can be done via:
conda install -c conda-forge pyedflib
The most recent development version can be found on GitHub at https://github.com/holgern/pyedflib.
The latest release, including source and binary packages for Linux, macOS and Windows, is available for download from the Python Package Index. You can find source releases at the Releases Page.
Highlevel interface
pyEDFlib includes an highlevel interface for easy access to read and write edf files. Additionally functionality as anonymizing, dropping or renaming channels can be found there.
from pyedflib import highlevel
# write an edf file
signals = np.random.rand(5, 256*300)*200 # 5 minutes of random signal
channel_names = ['ch1', 'ch2', 'ch3', 'ch4', 'ch5']
signal_headers = highlevel.make_signal_headers(channel_names, sample_frequency=256)
header = highlevel.make_header(patientname='patient_x', gender='Female')
highlevel.write_edf('edf_file.edf', signals, signal_headers, header)
# read an edf file
signals, signal_headers, header = highlevel.read_edf('edf_file.edf', ch_names=['ch1', 'ch2'])
print(signal_headers[0]['sample_frequency']) # prints 256
# drop a channel from the file or anonymize edf
highlevel.drop_channels('edf_file.edf', to_drop=['ch2', 'ch4'])
highlevel.anonymize_edf('edf_file.edf', new_file='anonymized.edf'
to_remove=['patientname', 'birthdate'],
new_values=['anonymized', ''])
# check if the two files have the same content
highlevel.compare_edf('edf_file.edf', 'anonymized.edf')
# change polarity of certain channels
highlevel.change_polarity('file.edf', channels=[1,3])
# rename channels within a file
highlevel.rename_channels('file.edf', mapping={'C3-M1':'C3'})Citation
If you use our software as part of a scientific publication, please cite us. Releases can be cited via Zenodo.
Holger Nahrstaedt, Simon Kern, Dimitri Papadopoulos Orfanos, Raphael Vallat, Clemens Brunner, Luca Cerina, Stefan Appelhoff, David T.H. Kao, Craig Franklin, Florian Hofer, bitterisland07, myd7349, Marijn van Vliet, Jukka Zitting, Guillaume Cathelain, David Ojeda, Chadwick Boulay, Blake, Ben Beasley, … Jacob Svensson. (2025). holgern/pyedflib: v0.1.40 (v0.1.40). Zenodo. https://doi.org/10.5281/zenodo.14957195
License
pyEDFlib is a free Open Source software released under the BSD 2-clause license.
1 maintainer
Metadata
1 maintainer
Release files for pyEDFlib 0.1.42
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| pyedflib-0.1.42.tar.gz | 2.3 MB | Details |
Built distributions (wheels)
Total release size: 152.0 MB
Release files / pyedflib-0.1.42.tar.gz
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Release files / pyedflib-0.1.42-cp312-cp312-win_amd64.whl
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Release files / pyedflib-0.1.42-cp310-cp310-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl
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Release files / pyedflib-0.1.42-cp310-cp310-manylinux2014_aarch64.manylinux_2_17_aarch64.manylinux_2_28_aarch64.whl
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twine/6.1.0 CPython/3.9.23
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Release files / pyedflib-0.1.42-cp310-cp310-macosx_11_0_arm64.whl
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Release files / pyedflib-0.1.42-cp310-cp310-macosx_10_9_x86_64.whl
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twine/6.1.0 CPython/3.9.23
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Release files / pyedflib-0.1.42-cp39-cp39-win_amd64.whl
| Download URL | pyedflib-0.1.42-cp39-cp39-win_amd64.whl |
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Release files / pyedflib-0.1.42-cp39-cp39-win32.whl
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twine/6.1.0 CPython/3.9.23
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Release files / pyedflib-0.1.42-cp39-cp39-musllinux_1_2_x86_64.whl
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twine/6.1.0 CPython/3.9.23
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Release files / pyedflib-0.1.42-cp39-cp39-musllinux_1_2_i686.whl
| Download URL | pyedflib-0.1.42-cp39-cp39-musllinux_1_2_i686.whl |
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twine/6.1.0 CPython/3.9.23
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Release files / pyedflib-0.1.42-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
| Download URL | pyedflib-0.1.42-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl |
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| Size | 2.8 MB |
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twine/6.1.0 CPython/3.9.23
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Release files / pyedflib-0.1.42-cp39-cp39-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl
| Download URL | pyedflib-0.1.42-cp39-cp39-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl |
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Release files / pyedflib-0.1.42-cp39-cp39-manylinux2014_aarch64.manylinux_2_17_aarch64.manylinux_2_28_aarch64.whl
| Download URL | pyedflib-0.1.42-cp39-cp39-manylinux2014_aarch64.manylinux_2_17_aarch64.manylinux_2_28_aarch64.whl |
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twine/6.1.0 CPython/3.9.23
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Release files / pyedflib-0.1.42-cp39-cp39-macosx_11_0_arm64.whl
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Release files / pyedflib-0.1.42-cp39-cp39-macosx_10_9_x86_64.whl
| Download URL | pyedflib-0.1.42-cp39-cp39-macosx_10_9_x86_64.whl |
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twine/6.1.0 CPython/3.9.23
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Release files / pyedflib-0.1.42-cp38-cp38-win_amd64.whl
| Download URL | pyedflib-0.1.42-cp38-cp38-win_amd64.whl |
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| Size | 2.3 MB |
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twine/6.1.0 CPython/3.9.23
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Release files / pyedflib-0.1.42-cp38-cp38-win32.whl
| Download URL | pyedflib-0.1.42-cp38-cp38-win32.whl |
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Release files / pyedflib-0.1.42-cp38-cp38-musllinux_1_2_x86_64.whl
| Download URL | pyedflib-0.1.42-cp38-cp38-musllinux_1_2_x86_64.whl |
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twine/6.1.0 CPython/3.9.23
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Release files / pyedflib-0.1.42-cp38-cp38-musllinux_1_2_i686.whl
| Download URL | pyedflib-0.1.42-cp38-cp38-musllinux_1_2_i686.whl |
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twine/6.1.0 CPython/3.9.23
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Release files / pyedflib-0.1.42-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
| Download URL | pyedflib-0.1.42-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl |
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| Size | 2.8 MB |
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twine/6.1.0 CPython/3.9.23
|
Release files / pyedflib-0.1.42-cp38-cp38-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl
| Download URL | pyedflib-0.1.42-cp38-cp38-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl |
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| Size | 2.8 MB |
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No |
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twine/6.1.0 CPython/3.9.23
|
Release files / pyedflib-0.1.42-cp38-cp38-manylinux2014_aarch64.manylinux_2_17_aarch64.manylinux_2_28_aarch64.whl
| Download URL | pyedflib-0.1.42-cp38-cp38-manylinux2014_aarch64.manylinux_2_17_aarch64.manylinux_2_28_aarch64.whl |
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| Size | 2.9 MB |
| Tags | CPython 3.8 Linux glibc 2.17+ ARM64 Linux glibc 2.28+ ARM64 |
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No |
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twine/6.1.0 CPython/3.9.23
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Release files / pyedflib-0.1.42-cp38-cp38-macosx_11_0_arm64.whl
| Download URL | pyedflib-0.1.42-cp38-cp38-macosx_11_0_arm64.whl |
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No |
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twine/6.1.0 CPython/3.9.23
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Release files / pyedflib-0.1.42-cp38-cp38-macosx_10_9_x86_64.whl
| Download URL | pyedflib-0.1.42-cp38-cp38-macosx_10_9_x86_64.whl |
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| Size | 2.3 MB |
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No |
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twine/6.1.0 CPython/3.9.23
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Release files / pyEDFlib-0.1.42-cp37-cp37m-win_amd64.whl
| Download URL | pyEDFlib-0.1.42-cp37-cp37m-win_amd64.whl |
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| Size | 2.3 MB |
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No |
| Uploaded via |
twine/6.1.0 CPython/3.9.23
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Release files / pyEDFlib-0.1.42-cp37-cp37m-win32.whl
| Download URL | pyEDFlib-0.1.42-cp37-cp37m-win32.whl |
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| Size | 2.3 MB |
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No |
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twine/6.1.0 CPython/3.9.23
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Release files / pyEDFlib-0.1.42-cp37-cp37m-musllinux_1_2_x86_64.whl
| Download URL | pyEDFlib-0.1.42-cp37-cp37m-musllinux_1_2_x86_64.whl |
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| Size | 2.8 MB |
| Tags | CPython 3.7 CPython 3.7 pymalloc Linux musl 1.2+ x86-64 |
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No |
| Uploaded via |
twine/6.1.0 CPython/3.9.23
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Release files / pyEDFlib-0.1.42-cp37-cp37m-musllinux_1_2_i686.whl
| Download URL | pyEDFlib-0.1.42-cp37-cp37m-musllinux_1_2_i686.whl |
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| Size | 2.8 MB |
| Tags | CPython 3.7 CPython 3.7 pymalloc Linux musl 1.2+ x86-32 |
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| Uploaded via |
twine/6.1.0 CPython/3.9.23
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Release files / pyEDFlib-0.1.42-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
| Download URL | pyEDFlib-0.1.42-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl |
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| Size | 2.8 MB |
| Tags | CPython 3.7 CPython 3.7 pymalloc Linux glibc 2.17+ x86-64 |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.9.23
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Release files / pyEDFlib-0.1.42-cp37-cp37m-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl
| Download URL | pyEDFlib-0.1.42-cp37-cp37m-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl |
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| Size | 2.7 MB |
| Tags | CPython 3.7 CPython 3.7 pymalloc Linux glibc 2.17+ x86-32 Linux glibc 2.5+ x86-32 |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.9.23
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Release files / pyEDFlib-0.1.42-cp37-cp37m-macosx_10_9_x86_64.whl
| Download URL | pyEDFlib-0.1.42-cp37-cp37m-macosx_10_9_x86_64.whl |
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| Size | 2.3 MB |
| Tags | CPython 3.7 CPython 3.7 pymalloc macOS 10.9+ x86-64 |
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SHA-256 checksum How to use checksums |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.9.23
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Release files / pyEDFlib-0.1.42-cp36-cp36m-win_amd64.whl
| Download URL | pyEDFlib-0.1.42-cp36-cp36m-win_amd64.whl |
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| Size | 2.3 MB |
| Tags | CPython 3.6 CPython 3.6 pymalloc Windows x86-64 |
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SHA-256 checksum How to use checksums |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.9.23
|
Release files / pyEDFlib-0.1.42-cp36-cp36m-win32.whl
| Download URL | pyEDFlib-0.1.42-cp36-cp36m-win32.whl |
|---|---|
| Size | 2.3 MB |
| Tags | CPython 3.6 CPython 3.6 pymalloc Windows x86-32 |
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SHA-256 checksum How to use checksums |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.9.23
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Release files / pyEDFlib-0.1.42-cp36-cp36m-musllinux_1_2_x86_64.whl
| Download URL | pyEDFlib-0.1.42-cp36-cp36m-musllinux_1_2_x86_64.whl |
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| Size | 2.8 MB |
| Tags | CPython 3.6 CPython 3.6 pymalloc Linux musl 1.2+ x86-64 |
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SHA-256 checksum How to use checksums |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.9.23
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Release files / pyEDFlib-0.1.42-cp36-cp36m-musllinux_1_2_i686.whl
| Download URL | pyEDFlib-0.1.42-cp36-cp36m-musllinux_1_2_i686.whl |
|---|---|
| Size | 2.7 MB |
| Tags | CPython 3.6 CPython 3.6 pymalloc Linux musl 1.2+ x86-32 |
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SHA-256 checksum How to use checksums |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.9.23
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Release files / pyEDFlib-0.1.42-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
| Download URL | pyEDFlib-0.1.42-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl |
|---|---|
| Size | 2.8 MB |
| Tags | CPython 3.6 CPython 3.6 pymalloc Linux glibc 2.17+ x86-64 |
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SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.9.23
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Release files / pyEDFlib-0.1.42-cp36-cp36m-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl
| Download URL | pyEDFlib-0.1.42-cp36-cp36m-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl |
|---|---|
| Size | 2.7 MB |
| Tags | CPython 3.6 CPython 3.6 pymalloc Linux glibc 2.17+ x86-32 Linux glibc 2.5+ x86-32 |
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SHA-256 checksum How to use checksums |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.9.23
|
Release files / pyEDFlib-0.1.42-cp36-cp36m-macosx_10_9_x86_64.whl
| Download URL | pyEDFlib-0.1.42-cp36-cp36m-macosx_10_9_x86_64.whl |
|---|---|
| Size | 2.3 MB |
| Tags | CPython 3.6 CPython 3.6 pymalloc macOS 10.9+ x86-64 |
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.9.23
|
