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Converts UniProt, HGNC, and Ensembl Transcript Ids to Entrez Gene Id

Project description

==========
PyEntrezId
==========


Example Code 1
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Converts Ensemble Transcript Gene Id to Entrez Gene Id ::
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from PyEntrezId import Conversion

EnsemblId = 'ENST00000407559'
Id = Conversion('sampleemail@nih.gov') #include your email address
EntrezId = Id.convert_ensembl_to_entrez(EnsemblId)
print(EntrezId) # Returns a String


Example Code 2
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Converts HGNC ID to Entrez Gene Id ::
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from PyEntrezId import Conversion

HGNCID = 9245 # hgncid ca be just the number or 'HGNC:9425'
Id = Conversion('sampleemail@nih.gov') #include your email address
EntrezId = Id.convert_hgnc_to_entrez(HGNCID)
print EntrezID # Returns a dictionary containing Symbol and Entrez Id


Example Code 3
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Converts Entrez Gene Id to Uniprot ID ::
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from PyEntrezId import Conversion

EntrezID = 39
Id = Conversion('sampleemail@nih.gov') #include your email address
UniProtId = Id.convert_entrez_to_uniprot(EntrezID)
print UniProtId # Returns a string


Example Code 4
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Converts Uniprot Id to Entrez Gene Id ::
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

from PyEntrezId import Conversion

UniProtId = 'Q9BWD1'
Id = Conversion('sampleemail@nih.gov') #include your email address
EntrezID = Id.convert_uniprot_to_entrez(UniProtId)
print EntrezID # Returns a string


Example Code 5
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Converts Accession Id to Taxonomy Id ::
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from PyEntrezId import Conversion

AccessionId = 'AC131209'
Id = Conversion('sampleemail@nih.gov') #include your email address
TaxID = Id.convert_accesion_to_taxid(AccesionId)
print TaxID # Returns a string


Project details


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