pyEntrezId 1.5.2

Converts UniProt, HGNC, and Ensembl Transcript Ids to Entrez Gene Id. Also, converts accession number to Taxonomy id

PyEntrezId
==========

Python package to convert between various gene or protein IDs

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Quick Start
-----------

::

$ pip install --upgrade pyEntrezId

Examples
--------

Convert Ensemble Transcript Gene Id to Entrez Gene Id ::
--------------------------------------------------------
from PyEntrezId import Conversion

EnsemblId = 'ENST00000407559'
Id = Conversion('[e-mail]') #include your email address
EntrezId = Id.convert_ensembl_to_entrez(EnsemblId)
print(EntrezId) # Returns a String


Convert HGNC ID to Entrez Gene Id ::
------------------------------------

.. code:: python
from PyEntrezId import Conversion

HGNCID = 9245 # HGNCID can be just the number or 'HGNC:9425'
Id = Conversion('[e-mail]') # include your email address
EntrezId = Id.convert_hgnc_to_entrez(HGNCID)
print EntrezID # Returns a dictionary containing Symbol and Entrez Id


Convert Entrez Gene Id to Uniprot ID ::
---------------------------------------

.. code:: python
from PyEntrezId import Conversion

EntrezID = 39
Id = Conversion('[e-mail]') #include your email address
UniProtId = Id.convert_entrez_to_uniprot(EntrezID)
print UniProtId # Returns a string


Convert Uniprot Id to Entrez Gene Id ::
---------------------------------------

.. code:: python
from PyEntrezId import Conversion

UniProtId = 'Q9BWD1'
Id = Conversion('[e-mail]') #include your email address
EntrezID = Id.convert_uniprot_to_entrez(UniProtId)
print EntrezID # Returns a string


Convert Accession Id to Taxonomy Id ::
--------------------------------------

.. code:: python
from PyEntrezId import Conversion

AccessionId = 'AC131209'
Id = Conversion('[e-mail]') #include your email address
TaxID = Id.convert_accesion_to_taxid(AccesionId)
print TaxID # Returns a string

Contributing
------------

Contributions to this library are always welcome and highly encouraged.

See 'CONTRIBUTING'_ for more information on how to get started.

.. _CONTRIBUTING: https://github.com/lwgray/PyEntrezId/blob/master/CONTRIBUTING.rst

License
-------

The MIT License (MIT)

.. _LICENSE: https://github.com/lwgray/PyEntrezID/blob/master/LICENSE