pyNIBS 0.1.5a0

A python toolbox to conduct non-invasive brain stimulation experiments (NIBS).

pyNIBS

Preprocessing, postprocessing, and analyses routines for non-invasive brain stimulation experiments.

pyNIBS provides the necessary tools to allow cortical mappings with transcranial magnetic stimulation (TMS) via functional analysis. pyNIBS is developed to work with SimNIBS, i.e. SimNIBS' meshes and FEM results can directly be used.

See the documentation for package details and our protocol publication for an extensive example of the usage.

Installation

Via pip:

pip install pynibs

You might need to manually compile the libbiosig package:

cd pynibs/pckg/biosig
tar -xvf biosig4c++-1.9.5.src_fixed.tar.gz
cd biosig4c++-1.9.5
./configure
make
cd python
python setup.py install

Finally, add :~/.local/lib to your .bashrc:

export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:~/.local/lib

Or clone the source repository and install via setup.py:

git clone https://gitlab.gwdg.de/tms-localization/pynibs
cd pynibs
python setup.py develop

Bugs

Yes. Drop us a line if you find any or feel free to file a PR.