pyRawTools is a Python package for loading Thermo MS data.
Project description
pyRawTools
pyRawTools is a Python package for Windows/Linux/Mac processing raw data from mass spectrometry experiments. Base on RawTools and UNIX command line.
Install
- Must install mono
- For macOS, use brew to install mono
brew install mono
- For Linux, use apt or yum to install mono
sudo apt install mono-complete
- Install or Build
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Install
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pip install pyRawTools
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Build
- Clone this repository
git clone https://github.com/EstrellaXD/pyRawTools.git
- Install python package
cd pyRawTools python setup.py install
- Clone this repository
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Usage
- Convert raw file to pandas DataFrame
from pyRawTools import MSLoader
loader = MSLoader()
raw_data, raw_metrix = loader.load('path/to/raw/file.RAW')
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