pyUSIrest 0.2.0.dev0

Python USI submission REST API contain all methods to interact with EMBL-EBI Unified Submissions interface

Python USI submission REST API

Python USI submission REST API contain all methods to interact with EMBL-EBI Unified Submissions Interface

• Free software: GNU General Public License v3

• Documentation: https://pyUSIrest.readthedocs.io.

Features

• Deal with EBI AAP (Authentication, Authorisation and Profile) service, generating tokens and dealing with User and Groups

• Interact with EBI USI (Unified Submission Interface) in order to submit data to biosample as described by this guide. In details:

  • Getting USI API root

  • Selecting a Team

  • Creating a Submission

  • Adding items to Submission

  • Checking Biosample Validation

  • Finalising a Submission

Credits

This package was created with Cookiecutter and the audreyr/cookiecutter-pypackage project template.

History

0.2.0-dev

Features

• Fetch submission by name

• changed library name to pyUSIrest

TODO

• Finalize submission is now done with PUT and not PATCH

• publish to pypi

0.1.0 (2018-10-17)

Features

• submit into biosample with python methods