pyabf 0.1.4

Python library for reading files in Axon Binary Format (ABF)

• Project Homepage: https://github.com/swharden/pyABF

• Package Usage: https://github.com/swharden/pyABF/tree/master/doc/pyabf

Quickstart

Display ABF Information:

import pyabf
abf=pyabf.ABF("filename.abf")
abf.info()

Plot all sweeps with matplotlib:

import pyabf
import matplotlib.pyplot as plt
abf=pyabf.ABF("filename.abf")
plt.figure(figsize=(8,4))
for sweepNumber in abf.sweepList:
  abf.setSweep(sweepNumber)
  plt.plot(abf.dataX,abf.dataY)
plt.ylabel(abf.unitsLong)
plt.xlabel(abf.unitsTimeLong)
plt.title(abf.ID)
plt.margins(0,.1)
plt.show()

Documentation

Full pyabf API documentation, additional code examples, a pyabf cookbook, and low-level information about the ABF file format can be found at the pyABF project homepage: https://github.com/swharden/pyABF