pyannotables 0.5

Python package for conversions between ENSEMBL IDs and gene names (annotables + pyensembl)

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pyannotables
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.. image:: https://img.shields.io/pypi/v/pyannotables.svg
:target: https://pypi.python.org/pypi/pyannotables


Python package for conversions between Ensembl IDs and gene names (annotables + pyranges + Ensembl GTF files)

* Free software: Apache Software License 2.0


Installation
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* `pip install pyannotables`


Features
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.. image:: notebook.png
:scale: 30 %


Building data frames
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See `./build.ipynb
<https://nbviewer.ipython.org/github/gokceneraslan/pyannotables/blob/master/build.ipynb>`_.


Changelog
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* v0.5: Homology mapping table and function (`homology_convert`) are added. tables is a function now.
* v0.4: Entrez and UNIPROT IDs are added.
* v0.3: Ensembl version updated to 100. NCBI transcript IDs, gene lengths and gene exon lengths are added.


Credits
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* `annotables package in R` https://github.com/stephenturner/annotables
* `audreyr/cookiecutter-pypackage`: https://github.com/audreyr/cookiecutter-pypackage


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History
=======


v0.5 (2020-10-29)
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* Homology mapping table and function (`homology_convert`) are added.
* tables is now a function.


v0.4 (2020-10-27)
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* Entrez and UNIPROT IDs are added.


v0.3 (2020-06-04)
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* Ensembl version updated to 100. NCBI transcript IDs, gene lengths and gene exon lengths are added.


v0.1 (2019-04-07)
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* First release on PyPI.