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Python package for conversions between ENSEMBL IDs and gene names (annotables + pyensembl)

Project description

pyannotables

https://img.shields.io/pypi/v/pyannotables.svg

Python package for conversions between Ensembl IDs and gene names (annotables + pyranges + Ensembl GTF files)

  • Free software: Apache Software License 2.0

Installation

  • pip install pyannotables

Features

notebook.png

Building data frames

See ./build.ipynb.

Changelog

  • v0.5: Homology mapping table and function (homology_convert) are added. tables is a function now.
  • v0.4: Entrez and UNIPROT IDs are added.
  • v0.3: Ensembl version updated to 100. NCBI transcript IDs, gene lengths and gene exon lengths are added.

Credits

History

v0.5 (2020-10-29)

  • Homology mapping table and function (homology_convert) are added.
  • tables is now a function.

v0.4 (2020-10-27)

  • Entrez and UNIPROT IDs are added.

v0.3 (2020-06-04)

  • Ensembl version updated to 100. NCBI transcript IDs, gene lengths and gene exon lengths are added.

v0.1 (2019-04-07)

  • First release on PyPI.

Project details


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Files for pyannotables, version 0.5
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Filename, size pyannotables-0.5-py2.py3-none-any.whl (25.5 MB) File type Wheel Python version py2.py3 Upload date Hashes View
Filename, size pyannotables-0.5.tar.gz (29.7 MB) File type Source Python version None Upload date Hashes View

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