Python package for conversions between ENSEMBL IDs and gene names (annotables + pyensembl)
Project description
pyannotables
Python package for conversions between Ensembl IDs and gene names (annotables + pyranges + Ensembl GTF files)
Free software: Apache Software License 2.0
Installation
pip install pyannotables
Features
Building data frames
See ./build.ipynb.
Changelog
v0.5: Homology mapping table and function (homology_convert) are added. tables is a function now.
v0.4: Entrez and UNIPROT IDs are added.
v0.3: Ensembl version updated to 100. NCBI transcript IDs, gene lengths and gene exon lengths are added.
Credits
annotables package in R https://github.com/stephenturner/annotables
audreyr/cookiecutter-pypackage: https://github.com/audreyr/cookiecutter-pypackage
History
v0.5 (2020-10-29)
Homology mapping table and function (homology_convert) are added.
tables is now a function.
v0.4 (2020-10-27)
Entrez and UNIPROT IDs are added.
v0.3 (2020-06-04)
Ensembl version updated to 100. NCBI transcript IDs, gene lengths and gene exon lengths are added.
v0.1 (2019-04-07)
First release on PyPI.
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