Skip to main content

Python package for conversions between ENSEMBL IDs and gene names (annotables + pyensembl)

Project description

pyannotables

https://img.shields.io/pypi/v/pyannotables.svg

Python package for conversions between Ensembl IDs and gene names (annotables + pyranges + Ensembl GTF files)

  • Free software: Apache Software License 2.0

Installation

  • pip install pyannotables

Features

notebook.png

Building data frames

See ./build.ipynb.

Changelog

  • v0.5: Homology mapping table and function (homology_convert) are added. tables is a function now.
  • v0.4: Entrez and UNIPROT IDs are added.
  • v0.3: Ensembl version updated to 100. NCBI transcript IDs, gene lengths and gene exon lengths are added.

Credits

History

v0.5 (2020-10-29)

  • Homology mapping table and function (homology_convert) are added.
  • tables is now a function.

v0.4 (2020-10-27)

  • Entrez and UNIPROT IDs are added.

v0.3 (2020-06-04)

  • Ensembl version updated to 100. NCBI transcript IDs, gene lengths and gene exon lengths are added.

v0.1 (2019-04-07)

  • First release on PyPI.

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

pyannotables-0.5.tar.gz (29.7 MB view hashes)

Uploaded source

Built Distribution

pyannotables-0.5-py2.py3-none-any.whl (25.5 MB view hashes)

Uploaded py2 py3

Supported by

AWS AWS Cloud computing Datadog Datadog Monitoring Facebook / Instagram Facebook / Instagram PSF Sponsor Fastly Fastly CDN Google Google Object Storage and Download Analytics Huawei Huawei PSF Sponsor Microsoft Microsoft PSF Sponsor NVIDIA NVIDIA PSF Sponsor Pingdom Pingdom Monitoring Salesforce Salesforce PSF Sponsor Sentry Sentry Error logging StatusPage StatusPage Status page