Python classes for interfacing with bed intervals
Project description
pybedlite
pip install pybedlite
Requires python 3.6+
Getting Setup
Poetry is used to manage the python development environment.
A simple way to create an environment with the desired version of python and poetry is to use conda. E.g.:
conda create -n pybedlite python=3.6 poetry
conda activate pybedlite
poetry install
If, during poetry install
on Mac OS X errors are encountered running gcc/clang to build pybedtools
or other packages with native code, try setting the following and re-running poetry install
:
export CFLAGS="-stdlib=libc++"
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