pybel-tools 0.5.1

Tools for using BEL documents in Python

PyBEL Tools is a suite of tools built on top of PyBEL to facilitate data management, integration, and analysis. For examples, see the PyBEL Notebooks repository.

Stable
Development

Citation

If you use PyBEL and PyBEL Tools in your work, please cite:

[1]

Hoyt et al., 2017. PyBEL: a computational framework for Biological Expression Language. Bioinformatics, btx660

Installation

PyBEL Tools can be installed easily from PyPI with the following code in your favorite terminal:

$ python3 -m pip install pybel_tools

or from the latest code on GitHub with:

$ python3 -m pip install git+https://github.com/pybel/pybel-tools.git@develop

See the installation documentation for more advanced instructions.

Documentation and Examples

• Documentation at https://pybel-tools.readthedocs.io

• Cookbook at https://github.com/pybel/pybel-notebooks

Acknowledgements

This package was originally developed as part of the master’s work of Charles Tapley Hoyt at Fraunhofer SCAI with partial support from the IMI projects: AETIONOMY and PHAGO.

Links

• Documented on Read the Docs

• Versioned on GitHub

• Tested on Travis CI

• Distributed by PyPI

• Chat on Gitter