pybigtools 0.1.0

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To build and install in a local virtualenv run

maturin build --release
pip install -I target/wheels/pybigtools-0.1.0-cp311-cp311-manylinux_2_28_x86_64.whl

Examples

(Replace <path> with the path to a bigWig file or url)

Iterator of intervals

import pybigtools
b = pybigtools.open(<path>)
i = b.intervals("chr1")
print(next(i))

Numpy array of values

import pybigtools
b = pybigtools.open(<path>)
a = b.values("chr1")
print(a.shape)

Open a file-like object

import pybigtools
b = pybigtools.open(open(<path>, 'rb'))
a = b.values("chr1")
print(a.shape)

Documenation

To generate documenation install pdoc3 with pip install pdoc3. Then make sure you have pybigtools install as above. Then run pdoc3 --html --force pybigtools.