Distance-based colocalisation analysis module
Project description
PyBioProx: 2 & 3d spatial distance analysis in Python
This module, pybioprox
, offers efficient 2d and 3d spatial analysis of colocalisation.
The analyses fall into the category of object-based colocalisation methods.
Installation
To install this Python module, you may use pip as follows:
pip install pybioprox
If you wish to also install the optional Graphical User Interface script, this may be done
by specifying the gui
optional extra:
pip install pybioprox[gui]
Getting started
Once installed, the module can be invoked from the command-line using:
python -m pybioprox <path_to_folder>
to run the analysis in batch mode on all data files at the location path_to_folder
.
If you have installed the gui component or already have the required gui libraries, present on your system, then you may also run
pybioprox_gui
directly from the command line.
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