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bioinformatic dashboards with panel/bokeh

Project description

Background

Bioinformatics visualization tools with PyViz Panel and Bokeh. The objective is to have a set of plots and dashboards that can be re-used inside Jupyter notebooks as part of bioinformatic workflows or deployed as local web apps.

Current tools include:

  • sequence alignment viewer
  • genome feature viewer
  • bam alignment viewer

Documentation is at https://pybioviz.readthedocs.io

Dependencies

pandas biopython panel bokeh pysam bcbio_gff

Installation

pip install pybioviz

Project details


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