bioinformatic dashboards with panel/bokeh
Bioinformatics visualization tools with PyViz Panel and Bokeh. The objective is to have a set of plots and dashboards that can be re-used inside Jupyter notebooks as part of bioinformatic workflows or deployed as local web apps.
Current tools include:
- sequence alignment viewer
- genome feature viewer
- bam alignment viewer
Documentation is at https://pybioviz.readthedocs.io
pandas biopython panel bokeh pysam bcbio_gff
pip install pybioviz
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