Python package for nanopore DNA methylation analysis downstream to Nanopolish
Project description
Full documentation is available at https://a-slide.github.io/pycoMeth/
Python package for nanopore DNA methylation analysis downstream to Nanopolish
pycoMeth
can be used for further analysis starting from the output files generated by Nanopolish call-methylation
. The package contains tools to summarize the methylation data at CpG or CpG island resolution .pycoMeth
also includes a simple method for differential methylation analysis across multiple samples.
pycoMeth workflow
pycoMeth example output IGV rendering
Authors
- Adrien Leger - aleg {at} ebi.ac.uk
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