Skip to main content

Python tool for parameter continuation and bifurcation analysis

Project description

PyCoBi

License Python PyPI version CircleCI Documentation Status DOI

PyCoBi is a Python tool for parameter continuations and automated bifurcation analysis. It provides a Python interface to Auto-07p [1], allowing for a more intuitive usage of Auto-07p commands within Python scripts. It provides direct access to solutions, branches, and their properties (i.e. special solutions, eigenvalues, etc.) as well as a range of plotting functions to visualize bifurcation diagrams and solutions. Finally, it allows to automatically generate the user-supplied Fortran routines via PyRates, such that Auto-07p can be fully used/controlled from within a single Python script, without the need to supply additional non-Python files.

Installation

To use PyCoBi, it is required to install Auto-07p. You can follow these installation instructions for detailed information on how to install Auto-07p in your specific setup. Note that it is not required to manually set any path variables, since PyAuto will take care of that for you.
A typical installation procedure would be the following:

Step 1: Clone the Auto-07p github repository:

git clone https://github.com/auto-07p/auto-07p

Step 2: Configure the installation scripts

Go to the directory that you cloned the Auto-07p repository into and call

./configure

Step 3: Install Auto-07p

In the same directory, call

make

Step 4: Install the Python version of Auto-07p

After that, in the same directory, execute the following call from within the Python environment that you would like to use for PyAuto

python setup.py install

Step 5: Install PyCoBi

Use pip to install the latest stable version of PyCoBi

pip install pycobi

Alternatively, the development version of PyCoBi can be installed by cloning the github repository and using the setup.py for installation (see steps 1 and 4).

Documentation

A full API, documentation, and use examples can be found at readthedocs.

References

[1] E.J. Doedel, T.F. Fairgrieve, B. Sandstede, A.R. Champneys, Y.A. Kuznetsov and W. Xianjun (2007) Auto-07p: Continuation and bifurcation software for ordinary differential equations. Technical report, Department of Computer Science, Concordia University, Montreal, Quebec.

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

pycobi-0.8.10.tar.gz (34.4 kB view details)

Uploaded Source

Built Distribution

pycobi-0.8.10-py3-none-any.whl (34.5 kB view details)

Uploaded Python 3

File details

Details for the file pycobi-0.8.10.tar.gz.

File metadata

  • Download URL: pycobi-0.8.10.tar.gz
  • Upload date:
  • Size: 34.4 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/6.1.0 CPython/3.9.22

File hashes

Hashes for pycobi-0.8.10.tar.gz
Algorithm Hash digest
SHA256 a1b2f54d302ca2aab9903b36b1e888b7bcaadff01fb8769cee71f13c2ce259b7
MD5 97f425c7449d14bb7a3e72b32217bf25
BLAKE2b-256 8ec696683f1fc653ce2d76588d7b4fcccb91ecb257d446b67a988af36a8c3ea5

See more details on using hashes here.

File details

Details for the file pycobi-0.8.10-py3-none-any.whl.

File metadata

  • Download URL: pycobi-0.8.10-py3-none-any.whl
  • Upload date:
  • Size: 34.5 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/6.1.0 CPython/3.9.22

File hashes

Hashes for pycobi-0.8.10-py3-none-any.whl
Algorithm Hash digest
SHA256 41cda419f9b243bdc04cc20ab48413646cada6dd992a52e2b937a3cf16384fcd
MD5 defc73c4e696926b109c2d242ca17b1d
BLAKE2b-256 85c75e680fc7d5541ebe8c02ad57b66192abed12ce823ae4ff820fc04c05ef29

See more details on using hashes here.

Supported by

AWS Cloud computing and Security Sponsor Datadog Monitoring Fastly CDN Google Download Analytics Pingdom Monitoring Sentry Error logging StatusPage Status page