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Interface with dbSNP VCF data

Project description

pydbsnp

Interface with dbSNP VCF data

Installation

First install the python package via pip3

pip3 install pydbsnp

or

pip3 install --user pydbsnp

Once the python package is installed, download and index the dbSBP VCF data:

pydbsnp-download
pydbsnp-index

For hg19/GRCh37 coordinates:

pydbsnp-download --reference-build GRCh37
pydbsnp-index

Command line usage

pydbsnp-query -h
pydbsnp-query rs689
pydbsnp-query --reference-build GRCh37 rs689

Project details


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