PyHRMS: Tools For working with High Resolution Mass Spectrometry (HRMS) data in Environmental Science

PyHRMS is a python package for processing high resolution Mass Spectrometry data coupled with gas chromatogram (GC) or liquid chromatogram (LC).

It aims to provide user friendly tool to read, process and visualize LC/GC-HRMS data for scientist.

Contributers: Rui Wang

Release date: Nov.15.2021

Update

Dec.27.2021: pyhrms 0.2.4 new features:

  • add identify_isotopes() function

  • debug some small issues

Installation & major dependencies pyhrms can be installed and import as following:

` pip install pyhrms `

pyhrms requires major dependencies:

  • numpy>=1.19.2

  • pandas>1.3.3

  • matplotlib>=3.3.2

  • pymzml>=2.4.7

  • scipy>=1.6.2

  • numba>=0.53.1

  • molmass>=2021.6.18

  • tqdm >= 4.62.3

Features

PyHRMS provides following functions:

  • Read raw LC/GC-HRMS data in mzML format;

  • Powerful and accurate peak picking function for LC/GC HRMS;

  • retention time (rt) and mass over Z stands for charge number of ions (m/z) will be aligned based on user defined error range.

  • Accurate function for comparing response between/among two or more samples;

  • Covert profile data to centroid

  • Parallel computing to improve efficiency;

  • Interactive visualizations of raw mzML data;

  • Supporting searching for Local database and massbank;

  • MS quality evaluation for ms data in profile.

Licensing

The package is open source and can be utilized under MIT license. Please find the detail in licence file.

Project links

Key dates

PyPI data
Data sourced directly from PyPI's database.
  • Released:
Newer release available (1.0.9)

1 maintainer

PyPI data
Data sourced directly from PyPI's database.
Avatar for wangrui from gravatar.com wangrui

Credits

Author: Wang Rui

License

MIT License

Requires

Python >=3.6

Classifiers

Report project as malware

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

pyhrms-0.2.4.zip (18.6 kB view details)

Uploaded Source

Built Distribution

If you're not sure about the file name format, learn more about wheel file names.

pyhrms-0.2.4-py3-none-any.whl (15.2 kB view details)

Uploaded Python 3

File details

Details for the file pyhrms-0.2.4.zip.

File metadata

  • Download URL: pyhrms-0.2.4.zip
  • Upload date:
  • Size: 18.6 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/3.7.1 importlib_metadata/4.9.0 pkginfo/1.8.2 requests/2.26.0 requests-toolbelt/0.9.1 tqdm/4.62.3 CPython/3.9.9

File hashes

Hashes for pyhrms-0.2.4.zip
Algorithm Hash digest
SHA256 71c10d94a246a6983a25b7cb19b530b6f38682ad6844bd054b0ac1934ef67b57
MD5 b49b0611732c6f2405f5ab134e84bcc1
BLAKE2b-256 9653482ff45a360e3d0219e0082b2c0c0c3bef35dbf78cfc8ee078486e251885

See more details on using hashes here.

File details

Details for the file pyhrms-0.2.4-py3-none-any.whl.

File metadata

  • Download URL: pyhrms-0.2.4-py3-none-any.whl
  • Upload date:
  • Size: 15.2 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/3.7.1 importlib_metadata/4.9.0 pkginfo/1.8.2 requests/2.26.0 requests-toolbelt/0.9.1 tqdm/4.62.3 CPython/3.9.9

File hashes

Hashes for pyhrms-0.2.4-py3-none-any.whl
Algorithm Hash digest
SHA256 4d2e8486733042083dc8d2d519d330a846ed2f68f3d46726047e7435f59e499e
MD5 f96f2b9ddc06940b57708e5cb04e47c0
BLAKE2b-256 82d401a02ab30c40ef148edcdb8dc4bfe5b24cbeeb08ea349397106a794300cb

See more details on using hashes here.

Release history Release notifications | RSS feed

1.0.9

1 file

1.0.8

1 file

1.0.7

1 file

1.0.6

1 file

1.0.5

1 file

1.0.4

1 file

1.0.3

1 file

1.0.2

1 file

1.0.1

1 file

1.0.0

2 files

0.9.9

2 files

0.9.8

2 files

0.9.7

2 files

0.9.6

2 files

0.9.5

2 files

0.9.4

2 files

0.9.3

2 files

0.9.2

2 files

0.9.1

2 files

0.9.0

2 files

0.8.9

2 files

0.8.8

2 files

0.8.7

2 files

0.8.6

2 files

0.8.5

2 files

0.8.4

2 files

0.8.3

2 files

0.8.2

2 files

0.8.1

2 files

0.8.0

2 files

0.7.9

2 files

0.7.8

2 files

0.7.7

2 files

0.7.6

2 files

0.7.5

2 files

0.7.4

2 files

0.7.3

2 files

0.7.2

2 files

0.7.1

2 files

0.7.0

2 files

0.6.9

2 files

0.6.8

2 files

0.6.7

2 files

0.6.6

2 files

0.6.5

2 files

0.6.4

2 files

0.6.3

2 files

0.6.2

2 files

0.6.1

2 files

0.6.0

2 files

0.5.9

2 files

0.5.8

2 files

0.5.7

2 files

0.5.6

2 files

0.5.5

2 files

0.5.4

2 files

0.5.3

1 file

0.5.2

2 files

0.5.1

2 files

0.4.0

2 files

0.3.9

2 files

0.3.8

2 files

0.3.7

2 files

0.3.6

2 files

0.3.5

2 files

0.3.4

2 files

0.3.3

2 files

0.3.2

2 files

0.3.1

1 file

0.2.10

2 files

0.2.9

2 files

0.2.7

2 files

0.2.6

2 files

0.2.5

2 files

This release

0.2.4 This release

2 files

0.2.3

2 files

0.2.2

2 files

0.2.1

2 files

0.2.0

2 files

0.1.9

2 files

0.1.8

2 files

0.1.7

2 files

0.1.6

2 files

0.1.5

2 files

0.1.4

2 files

0.1.3

2 files

0.1.2

2 files

0.1.1

2 files

0.1.0

2 files

Anthropic, PBC Visionary sponsor Bloomberg Visionary sponsor Hudson River Trading Visionary sponsor Meta Visionary sponsor NVIDIA Visionary sponsor Microsoft Sustainability sponsor Depot Continuous Integration AWS Cloud computing and Security Sponsor Datadog Monitoring Fastly CDN Google Download Analytics Sentry Error logging StatusPage Status page