PyHRMS: Tools For working with High Resolution Mass Spectrometry (HRMS) data in Environmental Science

PyHRMS is a python package for processing high resolution Mass Spectrometry data coupled with gas chromatogram (GC) or liquid chromatogram (LC).

It aims to provide user friendly tool to read, process and visualize LC/GC-HRMS data for scientist.

Contributers: Rui Wang

Release date: Nov.15.2021

Update

Mar.15.2022: pyhrms 0.3.4 new features:

  • Added some function for formula prediction

Installation & major dependencies pyhrms can be installed and import as following:

` pip install pyhrms `

If you just want to update a new version, please update as following:

` pip install pyhrms -U `

pyhrms requires major dependencies:

  • numpy>=1.19.2

  • pandas>1.3.3

  • matplotlib>=3.3.2

  • pymzml>=2.4.7

  • scipy>=1.6.2

  • numba>=0.53.1

  • molmass>=2021.6.18

  • tqdm >= 4.62.3

Features

PyHRMS provides following functions:

  • Read raw LC/GC-HRMS data in mzML format;

  • Powerful and accurate peak picking function for LC/GC HRMS;

  • retention time (rt) and mass over Z stands for charge number of ions (m/z) will be aligned based on user defined error range.

  • Accurate function for comparing response between/among two or more samples;

  • Covert profile data to centroid

  • Parallel computing to improve efficiency;

  • Interactive visualizations of raw mzML data;

  • Supporting searching for Local database and massbank;

  • MS quality evaluation for ms data in profile.

Licensing

The package is open source and can be utilized under MIT license. Please find the detail in licence file.

Project links

Key dates

PyPI data
Data sourced directly from PyPI's database.
  • Released:
Newer release available (1.0.9)

1 maintainer

PyPI data
Data sourced directly from PyPI's database.
Avatar for wangrui from gravatar.com wangrui

Credits

Author: Wang Rui

License

MIT License

Requires

Python >=3.6

Classifiers

Report project as malware

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

pyhrms-0.3.4.zip (23.4 kB view details)

Uploaded Source

Built Distribution

If you're not sure about the file name format, learn more about wheel file names.

pyhrms-0.3.4-py3-none-any.whl (20.0 kB view details)

Uploaded Python 3

File details

Details for the file pyhrms-0.3.4.zip.

File metadata

  • Download URL: pyhrms-0.3.4.zip
  • Upload date:
  • Size: 23.4 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/3.7.1 importlib_metadata/4.9.0 pkginfo/1.8.2 requests/2.26.0 requests-toolbelt/0.9.1 tqdm/4.62.3 CPython/3.9.9

File hashes

Hashes for pyhrms-0.3.4.zip
Algorithm Hash digest
SHA256 5149d282b7c8fbc1d8d5a3b9c78bef056bb4ef53e0738fe1412d253c23ab838c
MD5 4e1570b28e4f1509a95e4397a83b56ab
BLAKE2b-256 a826e70c7719d929fa6a6f5fd4f2d09a18406c07f7fa18a4951a43a6cfa0cf50

See more details on using hashes here.

File details

Details for the file pyhrms-0.3.4-py3-none-any.whl.

File metadata

  • Download URL: pyhrms-0.3.4-py3-none-any.whl
  • Upload date:
  • Size: 20.0 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/3.7.1 importlib_metadata/4.9.0 pkginfo/1.8.2 requests/2.26.0 requests-toolbelt/0.9.1 tqdm/4.62.3 CPython/3.9.9

File hashes

Hashes for pyhrms-0.3.4-py3-none-any.whl
Algorithm Hash digest
SHA256 b90015469d1c37d35a1673f2e2289544881401e2b3e95f6473f664f760417751
MD5 f923800c70c30efc314caca9c2630565
BLAKE2b-256 4f48a2c834b2e75eddaa22fc52a2bbc55e0c80918fd7565580c20dd9c8d65546

See more details on using hashes here.

Release history Release notifications | RSS feed

1.0.9

1 file

1.0.8

1 file

1.0.7

1 file

1.0.6

1 file

1.0.5

1 file

1.0.4

1 file

1.0.3

1 file

1.0.2

1 file

1.0.1

1 file

1.0.0

2 files

0.9.9

2 files

0.9.8

2 files

0.9.7

2 files

0.9.6

2 files

0.9.5

2 files

0.9.4

2 files

0.9.3

2 files

0.9.2

2 files

0.9.1

2 files

0.9.0

2 files

0.8.9

2 files

0.8.8

2 files

0.8.7

2 files

0.8.6

2 files

0.8.5

2 files

0.8.4

2 files

0.8.3

2 files

0.8.2

2 files

0.8.1

2 files

0.8.0

2 files

0.7.9

2 files

0.7.8

2 files

0.7.7

2 files

0.7.6

2 files

0.7.5

2 files

0.7.4

2 files

0.7.3

2 files

0.7.2

2 files

0.7.1

2 files

0.7.0

2 files

0.6.9

2 files

0.6.8

2 files

0.6.7

2 files

0.6.6

2 files

0.6.5

2 files

0.6.4

2 files

0.6.3

2 files

0.6.2

2 files

0.6.1

2 files

0.6.0

2 files

0.5.9

2 files

0.5.8

2 files

0.5.7

2 files

0.5.6

2 files

0.5.5

2 files

0.5.4

2 files

0.5.3

1 file

0.5.2

2 files

0.5.1

2 files

0.4.0

2 files

0.3.9

2 files

0.3.8

2 files

0.3.7

2 files

0.3.6

2 files

0.3.5

2 files

This release

0.3.4 This release

2 files

0.3.3

2 files

0.3.2

2 files

0.3.1

1 file

0.2.10

2 files

0.2.9

2 files

0.2.7

2 files

0.2.6

2 files

0.2.5

2 files

0.2.4

2 files

0.2.3

2 files

0.2.2

2 files

0.2.1

2 files

0.2.0

2 files

0.1.9

2 files

0.1.8

2 files

0.1.7

2 files

0.1.6

2 files

0.1.5

2 files

0.1.4

2 files

0.1.3

2 files

0.1.2

2 files

0.1.1

2 files

0.1.0

2 files

Anthropic, PBC Visionary sponsor Bloomberg Visionary sponsor Hudson River Trading Visionary sponsor Meta Visionary sponsor NVIDIA Visionary sponsor Microsoft Sustainability sponsor Depot Continuous Integration AWS Cloud computing and Security Sponsor Datadog Monitoring Fastly CDN Google Download Analytics Sentry Error logging StatusPage Status page