PyHRMS: Tools For working with High Resolution Mass Spectrometry (HRMS) data in Environmental Science

PyHRMS is a python package for processing high resolution Mass Spectrometry data coupled with gas chromatogram (GC) or liquid chromatogram (LC).

It aims to provide user friendly tool to read, process and visualize LC/GC-HRMS data for scientist.

Contributers: Rui Wang

Release date: Nov.15.2021

Update

June.27.2022: pyhrms 0.4.10 new features:

  • optimize algorithm

Installation & major dependencies pyhrms can be installed and import as following:

` pip install pyhrms `

If you just want to update a new version, please update as following:

` pip install pyhrms -U `

pyhrms requires major dependencies:

  • numpy>=1.19.2

  • pandas>1.3.3

  • matplotlib>=3.3.2

  • pymzml>=2.4.7

  • scipy>=1.6.2

  • molmass>=2021.6.18

  • tqdm >= 4.62.3

Features

PyHRMS provides following functions:

  • Read raw LC/GC-HRMS data in mzML format;

  • Powerful and accurate peak picking function for LC/GC HRMS;

  • retention time (rt) and mass over Z stands for charge number of ions (m/z) will be aligned based on user defined error range.

  • Accurate function for comparing response between/among two or more samples;

  • Covert profile data to centroid

  • Parallel computing to improve efficiency;

  • Interactive visualizations of raw mzML data;

  • Supporting searching for Local database and massbank;

  • MS quality evaluation for ms data in profile.

Licensing

The package is open source and can be utilized under MIT license. Please find the detail in licence file.

Project links

Key dates

PyPI data
Data sourced directly from PyPI's database.
  • Released:
Newer release available (1.0.9)

1 maintainer

PyPI data
Data sourced directly from PyPI's database.
Avatar for wangrui from gravatar.com wangrui

Credits

Author: Wang Rui

License

MIT License

Requires

Python >=3.6

Classifiers

Report project as malware

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

pyhrms-0.4.0.zip (34.2 kB view details)

Uploaded Source

Built Distribution

If you're not sure about the file name format, learn more about wheel file names.

pyhrms-0.4.0-py3-none-any.whl (30.8 kB view details)

Uploaded Python 3

File details

Details for the file pyhrms-0.4.0.zip.

File metadata

  • Download URL: pyhrms-0.4.0.zip
  • Upload date:
  • Size: 34.2 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/3.7.1 importlib_metadata/4.9.0 pkginfo/1.8.2 requests/2.26.0 requests-toolbelt/0.9.1 tqdm/4.62.3 CPython/3.9.9

File hashes

Hashes for pyhrms-0.4.0.zip
Algorithm Hash digest
SHA256 9d12edabf736bc3bf660ab1748c543da4e6e495037e63c26ad2b59c7b3d677ae
MD5 9e5e806f2ea2eff307c96959c734232d
BLAKE2b-256 22e5c00ca9afdc0c5ee03e083f5cb22bda7f4ce52618e1c308f006c5cf909ddf

See more details on using hashes here.

File details

Details for the file pyhrms-0.4.0-py3-none-any.whl.

File metadata

  • Download URL: pyhrms-0.4.0-py3-none-any.whl
  • Upload date:
  • Size: 30.8 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/3.7.1 importlib_metadata/4.9.0 pkginfo/1.8.2 requests/2.26.0 requests-toolbelt/0.9.1 tqdm/4.62.3 CPython/3.9.9

File hashes

Hashes for pyhrms-0.4.0-py3-none-any.whl
Algorithm Hash digest
SHA256 17fee973378574bc9b1e965c08fc1b256cde085f3f94053c4465053c6205669a
MD5 f9189d10c6eeb57dd655c2e1812908b2
BLAKE2b-256 002bcc814ecda4e7468dfe574858b64fb3ed30dbf276c26a830f70a76799a314

See more details on using hashes here.

Release history Release notifications | RSS feed

1.0.9

1 file

1.0.8

1 file

1.0.7

1 file

1.0.6

1 file

1.0.5

1 file

1.0.4

1 file

1.0.3

1 file

1.0.2

1 file

1.0.1

1 file

1.0.0

2 files

0.9.9

2 files

0.9.8

2 files

0.9.7

2 files

0.9.6

2 files

0.9.5

2 files

0.9.4

2 files

0.9.3

2 files

0.9.2

2 files

0.9.1

2 files

0.9.0

2 files

0.8.9

2 files

0.8.8

2 files

0.8.7

2 files

0.8.6

2 files

0.8.5

2 files

0.8.4

2 files

0.8.3

2 files

0.8.2

2 files

0.8.1

2 files

0.8.0

2 files

0.7.9

2 files

0.7.8

2 files

0.7.7

2 files

0.7.6

2 files

0.7.5

2 files

0.7.4

2 files

0.7.3

2 files

0.7.2

2 files

0.7.1

2 files

0.7.0

2 files

0.6.9

2 files

0.6.8

2 files

0.6.7

2 files

0.6.6

2 files

0.6.5

2 files

0.6.4

2 files

0.6.3

2 files

0.6.2

2 files

0.6.1

2 files

0.6.0

2 files

0.5.9

2 files

0.5.8

2 files

0.5.7

2 files

0.5.6

2 files

0.5.5

2 files

0.5.4

2 files

0.5.3

1 file

0.5.2

2 files

0.5.1

2 files

This release

0.4.0 This release

2 files

0.3.9

2 files

0.3.8

2 files

0.3.7

2 files

0.3.6

2 files

0.3.5

2 files

0.3.4

2 files

0.3.3

2 files

0.3.2

2 files

0.3.1

1 file

0.2.10

2 files

0.2.9

2 files

0.2.7

2 files

0.2.6

2 files

0.2.5

2 files

0.2.4

2 files

0.2.3

2 files

0.2.2

2 files

0.2.1

2 files

0.2.0

2 files

0.1.9

2 files

0.1.8

2 files

0.1.7

2 files

0.1.6

2 files

0.1.5

2 files

0.1.4

2 files

0.1.3

2 files

0.1.2

2 files

0.1.1

2 files

0.1.0

2 files

Anthropic, PBC Visionary sponsor Bloomberg Visionary sponsor Hudson River Trading Visionary sponsor Meta Visionary sponsor NVIDIA Visionary sponsor Microsoft Sustainability sponsor Depot Continuous Integration AWS Cloud computing and Security Sponsor Datadog Monitoring Fastly CDN Google Download Analytics Sentry Error logging StatusPage Status page