pyicmd 1.0.2

Python port of the iRODS icommands

# Python port of the irods icommands.
---
## Install
```bash
pip3 install --user pyicmd
```

## Usage
```bash
usage: pyicmd [--host HOST] [--port PORT] [--user USER] [--passwd PASSWD]
[--zone ZONE]
[cmd]

Python port of the irods icommands.

Supports irods_environment.json file created by iinit. File can be at its
default location ('~/.irods/irods_environment.json') or set via the
IRODS_ENVIRONMENT_FILE variable.

If user is set via the commandline irods_enviorment.json is ingored
and given (or default) command line arguments are used to open the session.

positional arguments:
cmd The icommand to run:
rm [file(s)] Remove the files listed from the irods server
ls [path] List the files and folders at the given path
put [loc] [file(s)] Copy file(s) and folder(s) from the local computer to [loc] on the server
get [files(s)] [loc] Copy file(s) and folder(s) from the server to [loc] on the local computer
To learn more about a function, type pyicmd [cmd] -h


optional arguments:
--host HOST Address of irods server
--port PORT irods server port
--user USER irods username
--passwd PASSWD irods user password
--zone ZONE irods zone

```

## Speed Test
By default, icommands uses multi-threading for uploads greater than ~35MB. pyicmd does not currently support multiple threaded uploads, causing it to be slower for large files.

# Contributing
----
## Testing
Tests for the functional.py API are written in pytest format and can be run
with

```bash
make test
```

Tests require a valid iRODS server and configured irods_environment.json file created by iinit. [This iRODS docker container](https://github.com/mjstealey/irods-provider-postgres) Was used to run the tests.

## Code Standard
Code should follow [Python's PEP8 style guide](https://www.python.org/dev/peps/pep-0008/). All contributions should pass standard pylint tests. These can be run using:

```bash
make lint
```