Omics Analysis Tool Suite
Project description
PyIOmica (pyiomica)
This repository contains PyIOmica, a Python package that provides bioinformatics utilities for analyzing (dynamic) omics datasets. PyIOmica extends MathIOmica usage to Python and implements new visualizations and computational tools for graph analyses.
PyIOmica Versions
1.0.0
PyIOmica Installation Instructions
A. INSTALLATION
Pre-Installation Requirements
To install PyIOmica on any platform you need:
Python version 3.7 or higher
Recommended: 16GB of RAM or higher
Installation Instructions
To install the current release from PyPI (Python Package Index) use pip:
pip install pyiomica
Alternatively, you can install directly from github using:
pip install git+https://github.com/gmiaslab/pyiomica/
B. RUNNING PyIOmica
After installation you can run:
>>> from pyiomica import pyiomica
C. DOCUMENTATION
Documentation for PyIOmica is built-in and is available through the help() functionality in Python.
D. ADDITIONAL INFORMATION
PyIOmica is a multi-omics analysis framework distributed as a Python package that aims to assist in bioinformatics.
The most current version of the package is maintained at https://github.com/gmiaslab/pyiomica
News are distributed via twitter (@mathiomica)
E. LICENSING
PyIOmica is released under an MIT License. Please also consult the folder LICENSES distributed with PyIOmica regarding Licensing information for use of external associated content.
F. OTHER CONTACT INFORMATION
Contributors: Sergii Domanskyi, Carlo Piermarocchi, George I. Mias.
G.MiasLab (https://georgemias.org)
e-mail: gmiaslab@gmail.com
twitter: @gmiaslab
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.