pyiomica 1.0.1

Omics Analysis Tool Suite

PyIOmica (pyiomica)

This repository contains PyIOmica, a Python package that provides bioinformatics utilities for analyzing (dynamic) omics datasets. PyIOmica extends MathIOmica usage to Python and implements new visualizations and computational tools for graph analyses.

PyIOmica Versions

• 1.0.0

PyIOmica Installation Instructions

A. INSTALLATION

Pre-Installation Requirements

To install PyIOmica on any platform you need:

1. Python version 3.7 or higher

2. Recommended: 16GB of RAM or higher

Installation Instructions

1. To install the current release from PyPI (Python Package Index) use pip:

pip install pyiomica

2. Alternatively, you can install directly from github using:

pip install git+https://github.com/gmiaslab/pyiomica/

B. RUNNING PyIOmica

After installation you can run:

>>> from pyiomica import pyiomica

C. DOCUMENTATION

Documentation for PyIOmica is built-in and is available through the help() functionality in Python.

D. ADDITIONAL INFORMATION

• PyIOmica is a multi-omics analysis framework distributed as a Python package that aims to assist in bioinformatics.

• The most current version of the package is maintained at https://github.com/gmiaslab/pyiomica

• News are distributed via twitter (@mathiomica)

E. LICENSING

PyIOmica is released under an MIT License. Please also consult the folder LICENSES distributed with PyIOmica regarding Licensing information for use of external associated content.

F. OTHER CONTACT INFORMATION

• Contributors: Sergii Domanskyi, Carlo Piermarocchi, George I. Mias.

• G.MiasLab (https://georgemias.org)

• e-mail: [e-mail]

• twitter: @gmiaslab