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Tools for modeling the evolution of biological complexity

Project Description

Pykaryote is a set of tools for modeling and studying the evolution of biological complexity.

Documentation is hosted at Read The Docs:

https://pykaryote.readthedocs.org/en/latest/

Installation

Pykaryote requires a number of dependencies, including Python and Open MPI. For installation instructions, see the documentation:

https://pykaryote.readthedocs.org/en/latest/tut/installing.html

Once the dependencies are installed, Pykaryote can be installed with:

pip install pykaryote

Usage

The main front end to Pykaryote is petri. To run a simulation with the default settings, run:

mpirun -np 2 petri run

This will save data and graphs to ~/pykaryote/comparison

For more information, see the Pykaryote documentation.

Release History

Release History

This version
History Node

1.1.1

History Node

1.1.0

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File Name & Checksum SHA256 Checksum Help Version File Type Upload Date
pykaryote-1.1.1-py2.7-linux-i686.egg (1.5 MB) Copy SHA256 Checksum SHA256 2.7 Egg Aug 30, 2013
pykaryote-1.1.1.tar.gz (1.5 MB) Copy SHA256 Checksum SHA256 Source Aug 30, 2013

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