Tools for modeling the evolution of biological complexity
Project description
Pykaryote is a set of tools for modeling and studying the evolution of biological complexity.
Documentation is hosted at Read The Docs:
https://pykaryote.readthedocs.org/en/latest/
Installation
Pykaryote requires a number of dependencies, including Python and Open MPI. For installation instructions, see the documentation:
https://pykaryote.readthedocs.org/en/latest/tut/installing.html
Once the dependencies are installed, Pykaryote can be installed with:
pip install pykaryote
Usage
The main front end to Pykaryote is petri. To run a simulation with the default settings, run:
mpirun -np 2 petri run
This will save data and graphs to ~/pykaryote/comparison
For more information, see the Pykaryote documentation.
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