Tools for modeling the evolution of biological complexity
Project Description
Pykaryote is a set of tools for modeling and studying the evolution of biological complexity.
Documentation is hosted at Read The Docs:
https://pykaryote.readthedocs.org/en/latest/
Installation
Pykaryote requires a number of dependencies, including Python and Open MPI. For installation instructions, see the documentation:
https://pykaryote.readthedocs.org/en/latest/tut/installing.html
Once the dependencies are installed, Pykaryote can be installed with:
pip install pykaryote
Usage
The main front end to Pykaryote is petri. To run a simulation with the default settings, run:
mpirun -np 2 petri run
This will save data and graphs to ~/pykaryote/comparison
For more information, see the Pykaryote documentation.
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| Filename, size & hash SHA256 hash help | File type | Python version | Upload date |
|---|---|---|---|
| pykaryote-1.1.1-py2.7-linux-i686.egg (1.5 MB) Copy SHA256 hash SHA256 | Egg | 2.7 | Aug 30, 2013 |
| pykaryote-1.1.1.tar.gz (1.5 MB) Copy SHA256 hash SHA256 | Source | None | Aug 30, 2013 |
