Tools for modeling the evolution of biological complexity
Pykaryote is a set of tools for modeling and studying the evolution of biological complexity.
Documentation is hosted at Read The Docs:
https://pykaryote.readthedocs.org/en/latest/
Pykaryote requires a number of dependencies, including Python and Open MPI. For installation instructions, see the documentation:
https://pykaryote.readthedocs.org/en/latest/tut/installing.html
Once the dependencies are installed, Pykaryote can be installed with:
pip install pykaryote
The main front end to Pykaryote is petri. To run a simulation with the default settings, run:
mpirun -np 2 petri run
This will save data and graphs to ~/pykaryote/comparison
For more information, see the Pykaryote documentation.
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
| File Name & Checksum SHA256 Checksum Help | Version | File Type | Upload Date |
|---|---|---|---|
| pykaryote-1.1.1-py2.7-linux-i686.egg (1.5 MB) Copy SHA256 Checksum SHA256 | 2.7 | Egg | Aug 30, 2013 |
| pykaryote-1.1.1.tar.gz (1.5 MB) Copy SHA256 Checksum SHA256 | – | Source | Aug 30, 2013 |
