A package to compute the Robinson Fould distance extended to labeled topologies.
Project description
pyLabeledRF
pyLabeledRF is a heuristic to compute an extension of the Robinson Foulds tree topological distance between labeled topologies, where inner nodes are labeled with speciation or duplication events.
Citation
If you use our package in your work, please consider citing:
Samuel Briand, Christophe Dessimoz, Nadia El-Mabrouk1, Manuel Lafond, Gabriela Lobinska, Extending the Robinson-Foulds distance toreconciled trees, submitted
Installation
The package requires Python 3 (>=3.6). The easiest way to install is using
pip
, to install the package from
PyPI.
pip install pyLabeledRF
Documentation
Documentation is available here.
Example
License
Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:
The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
SOFTWARE.
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Project details
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