pylagg 0.3.0

A CLI tool for creating images from DNA sequences

LAGG

A CLI tool for creating images from DNA sequences.

Installation

Install LAGG using pip with the following command:

pip install pylagg

For Developers

Activate virtual environment with poetry shell

cd pylagg

To try out commands, type lagg <command> <arguments>

Example accession numbers

SRR8782097 will lead to 1 .fastq.gz files

SRR6670124 will lead to 2 .fastq.gz files

For Contributors

This project uses Poetry to handle dependencies and build the project. Installation instructions can be found here.

Install Dependencies

Use poetry install to install all dependencies automatically in a new virtual environment. If you'd like to install the dependencies directly within the project directory, use the following command:

poetry config virtualenvs.in-project true

Running Tests

To run tests, first, activate the virtual environment using poetry shell.

Use pytest to run all tests.