A python library for lattice light-sheet image analysis
Project description
pyLattice
A python library for advanced lattice light-sheet image analysis
Welcome!
Please read the manual to get started.
Installation
clone or download the repository
pip install pylattice
pip install -r requirements.txt
cd source/jupyter
jupyter notebook
in browser open source/jupyter/latticeFrame_showFrame.ipynb
Test data
A small test data set can be found here: https://www.dropbox.com/sh/s7q45h7wqoco5hl/AAB2Tt5lTGSkF2VhMTMM8NEWa?dl=0
FAQ
Lattice Light-Sheet Microscopy
References
- scikit http://scikit-image.org
- ChimeraX https://www.cgl.ucsf.edu/chimerax/
- llsm tools https://github.com/francois-a/llsmtools
- utrack https://www.utsouthwestern.edu/labs/danuser/software/#utrack_ancs
- Joh Schöneberg http://www.schoeneberglab.org
- The Betzig Lab https://www.janelia.org/lab/betzig-lab
- The Drubin/Barnes Lab https://drubinbarneslab.berkeley.edu
Project details
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