PYMEX package is a collection of modules providing tools for accessing interaction data distributed by The IMEx Consortium partners as well as for parsing, transformation and construction of PSI-MI endorsed interaction data files.
Modules
pymex.xmlrecord- A generic, configurable XML record serializer/deserializer.pymex.mif- PSI-MI XML format support (versions 2.5.4 and 3.0.0).pymex.pypsiq- PSICQUC server access.
Quick Start
from lxml import etree as ET
import pymex.mif
rec = pymex.mif.Record()
rec.parseMif( file, 'mif254' )
for interaction in rec.interactions:
print( "Interaction type:",interaction.type.label )
print( "Participant count:", len(interaction.participants))
for participant in interaction.participants:
print(" Participant:",participant.interactor.label)
print(" Host:", participant.interactor.host.label)
print(" Type:", participant.interactor.type.label)
print(" Sequence:", participant.interactor.sequence)
recDom = rec.toMif( 'mif300' )
print( ET.tostring(recDom,pretty_print=True).decode("utf-8") )
Further details: Pymex Wiki
Release files for pymex 0.9.31
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| pymex-0.9.31.tar.gz | 53.8 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| pymex-0.9.31-py2-none-any.whl | Python 2 | none | any | Details |
Total release size: 119.0 kB
Release files / pymex-0.9.31.tar.gz
| Download URL | pymex-0.9.31.tar.gz |
|---|---|
| Size | 53.8 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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No |
| Uploaded via |
twine/3.4.2 importlib_metadata/4.5.0 pkginfo/1.7.0 requests/2.25.1 requests-toolbelt/0.9.1 tqdm/4.61.1 CPython/3.6.9
|
Release files / pymex-0.9.31-py2-none-any.whl
| Download URL | pymex-0.9.31-py2-none-any.whl |
|---|---|
| Size | 65.3 kB |
| Tags | Python 2 |
|
SHA-256 checksum How to use checksums |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/3.4.2 importlib_metadata/4.5.0 pkginfo/1.7.0 requests/2.25.1 requests-toolbelt/0.9.1 tqdm/4.61.1 CPython/3.6.9
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