pynomer

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pynomer <https://github.com/nleguillarme/pynomer>_ is a simple python wrapper for nomer <https://github.com/globalbioticinteractions/nomer>_. Nomer is a stand-alone java application which maps identifiers and names to taxonomic names and ontological terms.

Usage

See full documentation at https://pynomer.readthedocs.io/en/latest/.

Installation

Download and build nomer-docker container ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

pynomer uses HTTP requests to access nomer commands exposes by a dockerized RESTful API. You can find the instructions for building and running the nomer-docker container here <https://github.com/nleguillarme/nomer-docker>_

Install pynomer python package ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

pynomer stable version can be installed from PyPi.

::

pip install pynomer

License

License: MIT

Authors

pynomer was written by nleguillarme <nicolas.leguillarme@univ-grenoble-alpes.fr>_.