Python wrapper for C++ LCMS library OpenMS
Project description
This package contains Python bindings for a large part of the OpenMS library for mass spectrometry based proteomics. It thus provides providing facile access to a feature-rich, open-source algorithm library for mass-spectrometry based proteomics analysis. These Python bindings allow raw access to the data-structures and algorithms implemented in OpenMS, specifically those for file access (mzXML, mzML, TraML, mzIdentML among others), basic signal processing (smoothing, filtering, de-isotoping and peak-picking) and complex data analysis (including label-free, SILAC, iTRAQ and SWATH analysis tools).
You can install pyopenms using:
pip install pyopenms
Please see https://github.com/OpenMS/OpenMS/wiki/pyOpenMS for more information.
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distributions
Built Distributions
File details
Details for the file pyopenms_nightly-2.6.0.dev20200912-cp38-cp38-win_amd64.whl.
File metadata
- Download URL: pyopenms_nightly-2.6.0.dev20200912-cp38-cp38-win_amd64.whl
- Upload date:
- Size: 28.1 MB
- Tags: CPython 3.8, Windows x86-64
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/3.2.0 pkginfo/1.5.0.1 requests/2.24.0 setuptools/50.3.0 requests-toolbelt/0.9.1 tqdm/4.49.0 CPython/3.8.5
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | a4d7b80443fd784df938cc04a1bb66a7ac1d3fe538a19470c55d2d59935020f9 |
|
| MD5 | 2543e7d94f22f8d185012a9e198a1336 |
|
| BLAKE2b-256 | a4a667307e8cd0ff6fa605a2c3c00fdadc7bfd0ee40f56fe53f368274c262cae |
File details
Details for the file pyopenms_nightly-2.6.0.dev20200912-cp38-cp38-manylinux2014_x86_64.whl.
File metadata
- Download URL: pyopenms_nightly-2.6.0.dev20200912-cp38-cp38-manylinux2014_x86_64.whl
- Upload date:
- Size: 38.7 MB
- Tags: CPython 3.8
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/3.2.0 pkginfo/1.5.0.1 requests/2.24.0 setuptools/50.3.0 requests-toolbelt/0.9.1 tqdm/4.49.0 CPython/3.8.5
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | b92705f7ad6b82b426fb404f8cb3cb0f6da381c981735f0bb0f86013e9a09b64 |
|
| MD5 | b9d958ebd84bac44ab2f825f126b0364 |
|
| BLAKE2b-256 | 6474ecd67f1e14ce1493e2c1363c8e758e402a97e849916d8f988cede69ffbaa |
File details
Details for the file pyopenms_nightly-2.6.0.dev20200912-cp38-cp38-macosx_10_9_x86_64.whl.
File metadata
- Download URL: pyopenms_nightly-2.6.0.dev20200912-cp38-cp38-macosx_10_9_x86_64.whl
- Upload date:
- Size: 50.6 MB
- Tags: CPython 3.8, macOS 10.9+ x86-64
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/3.2.0 pkginfo/1.5.0.1 requests/2.24.0 setuptools/50.3.0 requests-toolbelt/0.9.1 tqdm/4.49.0 CPython/3.8.5
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | 684748717126ca13d286576c39a20ab126ac261a82fc3f7866a3f7b7ac3f7952 |
|
| MD5 | 9554426ffe0d24b4ae3d82e0ecb9ac77 |
|
| BLAKE2b-256 | 40401057aa6edfca0233fec34fe53e45661bae29305514fe41bdfdc88a74b2b9 |
File details
Details for the file pyopenms_nightly-2.6.0.dev20200912-cp37-cp37m-win_amd64.whl.
File metadata
- Download URL: pyopenms_nightly-2.6.0.dev20200912-cp37-cp37m-win_amd64.whl
- Upload date:
- Size: 27.9 MB
- Tags: CPython 3.7m, Windows x86-64
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/3.2.0 pkginfo/1.5.0.1 requests/2.24.0 setuptools/50.3.0 requests-toolbelt/0.9.1 tqdm/4.49.0 CPython/3.8.5
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | c7d204a74c55fb9b79903aad118e2f6a66d8d4869863945db093a9857dec2109 |
|
| MD5 | 097fbe43660e30c353f93d3f31b6e154 |
|
| BLAKE2b-256 | 087dec41332cd663bf42fb4784afe1b171dba0fb43633aa8120a3e6267658752 |
File details
Details for the file pyopenms_nightly-2.6.0.dev20200912-cp37-cp37m-manylinux2014_x86_64.whl.
File metadata
- Download URL: pyopenms_nightly-2.6.0.dev20200912-cp37-cp37m-manylinux2014_x86_64.whl
- Upload date:
- Size: 38.5 MB
- Tags: CPython 3.7m
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/3.2.0 pkginfo/1.5.0.1 requests/2.24.0 setuptools/50.3.0 requests-toolbelt/0.9.1 tqdm/4.49.0 CPython/3.8.5
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | 4cb6b25823e093cd6958cb5ca9f2b8431052878f843c4ff4c2f50afa7b73e1f9 |
|
| MD5 | 435b4387919d38a71ba7e731cb18608b |
|
| BLAKE2b-256 | 42b841441665589a97b89bfe8a3936928eec522df54fcdd3498017c0156601e7 |
File details
Details for the file pyopenms_nightly-2.6.0.dev20200912-cp37-cp37m-macosx_10_9_x86_64.whl.
File metadata
- Download URL: pyopenms_nightly-2.6.0.dev20200912-cp37-cp37m-macosx_10_9_x86_64.whl
- Upload date:
- Size: 50.5 MB
- Tags: CPython 3.7m, macOS 10.9+ x86-64
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/3.2.0 pkginfo/1.5.0.1 requests/2.24.0 setuptools/50.3.0 requests-toolbelt/0.9.1 tqdm/4.49.0 CPython/3.8.5
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | 74d1320be0a21265c5ea79d7a0a1cfc09bf9aaf0ee5de3b6e9e85bef202ca51a |
|
| MD5 | b8ac1f5f427fcb596e7c00521bab66db |
|
| BLAKE2b-256 | 82468d3436834d6d9b29bd3f4d7b43ce6af5262e073f0cb873b1b93e6090028b |
File details
Details for the file pyopenms_nightly-2.6.0.dev20200912-cp36-cp36m-win_amd64.whl.
File metadata
- Download URL: pyopenms_nightly-2.6.0.dev20200912-cp36-cp36m-win_amd64.whl
- Upload date:
- Size: 27.9 MB
- Tags: CPython 3.6m, Windows x86-64
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/3.2.0 pkginfo/1.5.0.1 requests/2.24.0 setuptools/50.3.0 requests-toolbelt/0.9.1 tqdm/4.49.0 CPython/3.8.5
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | 5f23598c0401409efca38306a6aa92a281ac56c866462099fff1ab58018c4158 |
|
| MD5 | b3ad60eb31c947cfe141dcb16ed2752b |
|
| BLAKE2b-256 | 55a2355092252fd825a45eb989e08aebccfd3e6a2a28580ff6e4031de720320f |
File details
Details for the file pyopenms_nightly-2.6.0.dev20200912-cp36-cp36m-manylinux2014_x86_64.whl.
File metadata
- Download URL: pyopenms_nightly-2.6.0.dev20200912-cp36-cp36m-manylinux2014_x86_64.whl
- Upload date:
- Size: 38.6 MB
- Tags: CPython 3.6m
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/3.2.0 pkginfo/1.5.0.1 requests/2.24.0 setuptools/50.3.0 requests-toolbelt/0.9.1 tqdm/4.49.0 CPython/3.8.5
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | 2804498259a97db6efc720c4fab9f1227f4098351f39c903539c5ca601aaada1 |
|
| MD5 | e1024cc6aeea94423f1bb11cd8e4120e |
|
| BLAKE2b-256 | f92d61ac2d898fbf0277073e42df0e943bc93d3e1782cdd325bd48c256036159 |
File details
Details for the file pyopenms_nightly-2.6.0.dev20200912-cp36-cp36m-macosx_10_9_x86_64.whl.
File metadata
- Download URL: pyopenms_nightly-2.6.0.dev20200912-cp36-cp36m-macosx_10_9_x86_64.whl
- Upload date:
- Size: 50.7 MB
- Tags: CPython 3.6m, macOS 10.9+ x86-64
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/3.2.0 pkginfo/1.5.0.1 requests/2.24.0 setuptools/50.3.0 requests-toolbelt/0.9.1 tqdm/4.49.0 CPython/3.8.5
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | 3e4930e5ae04e35543ecb573cca256f063aeb0456cb62d9449cd348e1efada69 |
|
| MD5 | 488f400f0ad45ff61f1bd0f05e299a0a |
|
| BLAKE2b-256 | 91a2ca6792f5ea0af52373f7a868b1e1465a7c3f29aa4102ace9303c72fd05d4 |
File details
Details for the file pyopenms_nightly-2.6.0.dev20200912-cp35-cp35m-manylinux2014_x86_64.whl.
File metadata
- Download URL: pyopenms_nightly-2.6.0.dev20200912-cp35-cp35m-manylinux2014_x86_64.whl
- Upload date:
- Size: 38.5 MB
- Tags: CPython 3.5m
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/3.2.0 pkginfo/1.5.0.1 requests/2.24.0 setuptools/50.3.0 requests-toolbelt/0.9.1 tqdm/4.49.0 CPython/3.8.5
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | 8d3bbc15e12175f63eb525c59f47d3fd42e5b39cef31545aa85ba5e096060000 |
|
| MD5 | 59a72570325c94fc3aec5bee5afbb6d1 |
|
| BLAKE2b-256 | 8d9a24aa1d6e3900b7159faec326569e0cda61e19347a7af5ab7dd3d81b8c998 |
