Skip to main content

Python wrapper for C++ LCMS library OpenMS

Project description

This package contains Python bindings for a large part of the OpenMS library for mass spectrometry based proteomics. It thus provides providing facile access to a feature-rich, open-source algorithm library for mass-spectrometry based proteomics analysis. These Python bindings allow raw access to the data-structures and algorithms implemented in OpenMS, specifically those for file access (mzXML, mzML, TraML, mzIdentML among others), basic signal processing (smoothing, filtering, de-isotoping and peak-picking) and complex data analysis (including label-free, SILAC, iTRAQ and SWATH analysis tools).

You can install pyopenms using:

pip install pyopenms

Please see https://github.com/OpenMS/OpenMS/wiki/pyOpenMS for more information.

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distributions

No source distribution files available for this release.See tutorial on generating distribution archives.

Built Distributions

pyopenms-2.7.0-cp39-cp39-win_amd64.whl (29.4 MB view details)

Uploaded CPython 3.9 Windows x86-64

pyopenms-2.7.0-cp39-cp39-manylinux2014_x86_64.whl (49.2 MB view details)

Uploaded CPython 3.9

pyopenms-2.7.0-cp39-cp39-macosx_10_15_x86_64.whl (51.4 MB view details)

Uploaded CPython 3.9 macOS 10.15+ x86-64

pyopenms-2.7.0-cp38-cp38-win_amd64.whl (29.7 MB view details)

Uploaded CPython 3.8 Windows x86-64

pyopenms-2.7.0-cp38-cp38-manylinux2014_x86_64.whl (49.2 MB view details)

Uploaded CPython 3.8

pyopenms-2.7.0-cp38-cp38-macosx_10_15_x86_64.whl (52.8 MB view details)

Uploaded CPython 3.8 macOS 10.15+ x86-64

pyopenms-2.7.0-cp37-cp37m-win_amd64.whl (29.5 MB view details)

Uploaded CPython 3.7m Windows x86-64

pyopenms-2.7.0-cp37-cp37m-manylinux2014_x86_64.whl (49.0 MB view details)

Uploaded CPython 3.7m

pyopenms-2.7.0-cp37-cp37m-macosx_10_15_x86_64.whl (52.7 MB view details)

Uploaded CPython 3.7m macOS 10.15+ x86-64

pyopenms-2.7.0-cp37-cp37m-macosx_10_9_x86_64.whl (52.3 MB view details)

Uploaded CPython 3.7m macOS 10.9+ x86-64

File details

Details for the file pyopenms-2.7.0-cp39-cp39-win_amd64.whl.

File metadata

  • Download URL: pyopenms-2.7.0-cp39-cp39-win_amd64.whl
  • Upload date:
  • Size: 29.4 MB
  • Tags: CPython 3.9, Windows x86-64
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/3.4.2 importlib_metadata/4.6.4 pkginfo/1.7.1 requests/2.26.0 requests-toolbelt/0.9.1 tqdm/4.62.2 CPython/3.9.6

File hashes

Hashes for pyopenms-2.7.0-cp39-cp39-win_amd64.whl
Algorithm Hash digest
SHA256 b538088cb80f3546b3265790fcd09da8eafb94b312877ea3b754fa859fbf400f
MD5 025e6ac4c10b521e8b54d1701cb3dcbf
BLAKE2b-256 5ac2f277ba801e35d7c9746be964461be1c8595709e914ee2be6a4ec6ba4dbe1

See more details on using hashes here.

File details

Details for the file pyopenms-2.7.0-cp39-cp39-manylinux2014_x86_64.whl.

File metadata

  • Download URL: pyopenms-2.7.0-cp39-cp39-manylinux2014_x86_64.whl
  • Upload date:
  • Size: 49.2 MB
  • Tags: CPython 3.9
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/3.4.2 importlib_metadata/4.6.4 pkginfo/1.7.1 requests/2.26.0 requests-toolbelt/0.9.1 tqdm/4.62.2 CPython/3.9.6

File hashes

Hashes for pyopenms-2.7.0-cp39-cp39-manylinux2014_x86_64.whl
Algorithm Hash digest
SHA256 fc6529d42d535f4fb953be49500f7ada35c8dfd477041206e93e4da9445a4b07
MD5 c5fd10b95f4639c424aaba1782f904c1
BLAKE2b-256 8c954855bb63db963d698128ceae3d47ae98c7738dc7f2c1d95406ec24eeaf94

See more details on using hashes here.

File details

Details for the file pyopenms-2.7.0-cp39-cp39-macosx_10_15_x86_64.whl.

File metadata

  • Download URL: pyopenms-2.7.0-cp39-cp39-macosx_10_15_x86_64.whl
  • Upload date:
  • Size: 51.4 MB
  • Tags: CPython 3.9, macOS 10.15+ x86-64
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/3.4.2 importlib_metadata/4.6.4 pkginfo/1.7.1 requests/2.26.0 requests-toolbelt/0.9.1 tqdm/4.62.2 CPython/3.9.6

File hashes

Hashes for pyopenms-2.7.0-cp39-cp39-macosx_10_15_x86_64.whl
Algorithm Hash digest
SHA256 de60c74660c04bf3d038dee44a45f554ab0a272ec395e24e858cc0fa3b5ff4e9
MD5 370b67f4247d5fccf2b694194fe33fa0
BLAKE2b-256 3347f517efbde0284b638bf5b08151d6f8875a0729919dbc592bb05a258784a5

See more details on using hashes here.

File details

Details for the file pyopenms-2.7.0-cp38-cp38-win_amd64.whl.

File metadata

  • Download URL: pyopenms-2.7.0-cp38-cp38-win_amd64.whl
  • Upload date:
  • Size: 29.7 MB
  • Tags: CPython 3.8, Windows x86-64
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/3.4.2 importlib_metadata/4.6.4 pkginfo/1.7.1 requests/2.26.0 requests-toolbelt/0.9.1 tqdm/4.62.2 CPython/3.9.6

File hashes

Hashes for pyopenms-2.7.0-cp38-cp38-win_amd64.whl
Algorithm Hash digest
SHA256 56a0b439537e85861262265557abbcdc85edb19bda4037f3ee899a1c02b774b8
MD5 e3d2bfbb266317c582ac8c5f405c693c
BLAKE2b-256 7f9dd319e00f4dc96ac3c5994af80d022a4efc89066abcf72c4805e31b31c61f

See more details on using hashes here.

File details

Details for the file pyopenms-2.7.0-cp38-cp38-manylinux2014_x86_64.whl.

File metadata

  • Download URL: pyopenms-2.7.0-cp38-cp38-manylinux2014_x86_64.whl
  • Upload date:
  • Size: 49.2 MB
  • Tags: CPython 3.8
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/3.4.2 importlib_metadata/4.6.4 pkginfo/1.7.1 requests/2.26.0 requests-toolbelt/0.9.1 tqdm/4.62.2 CPython/3.9.6

File hashes

Hashes for pyopenms-2.7.0-cp38-cp38-manylinux2014_x86_64.whl
Algorithm Hash digest
SHA256 f7136cc7af2e752c7be852fe5a713d1c1ce14323dd886d53ce681c14cd0fff2c
MD5 042040317a84a36469c97b43c2256023
BLAKE2b-256 c034dc7ebedaaa07546d3c8d0a2be2a4b440438601b846afd4b0a10cdefe1e6f

See more details on using hashes here.

File details

Details for the file pyopenms-2.7.0-cp38-cp38-macosx_10_15_x86_64.whl.

File metadata

  • Download URL: pyopenms-2.7.0-cp38-cp38-macosx_10_15_x86_64.whl
  • Upload date:
  • Size: 52.8 MB
  • Tags: CPython 3.8, macOS 10.15+ x86-64
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/3.4.2 importlib_metadata/4.6.4 pkginfo/1.7.1 requests/2.26.0 requests-toolbelt/0.9.1 tqdm/4.62.2 CPython/3.9.6

File hashes

Hashes for pyopenms-2.7.0-cp38-cp38-macosx_10_15_x86_64.whl
Algorithm Hash digest
SHA256 2baf6bf9326c55fbaec1e3963564816584da810a147c5ce8694546d9a3552a26
MD5 926e19688b0bafe2f5801529ed5c6113
BLAKE2b-256 7000f111c647f9dd3bee768ab50357a45d320e0ab391252bb652eed2274e9d92

See more details on using hashes here.

File details

Details for the file pyopenms-2.7.0-cp37-cp37m-win_amd64.whl.

File metadata

  • Download URL: pyopenms-2.7.0-cp37-cp37m-win_amd64.whl
  • Upload date:
  • Size: 29.5 MB
  • Tags: CPython 3.7m, Windows x86-64
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/3.4.2 importlib_metadata/4.6.4 pkginfo/1.7.1 requests/2.26.0 requests-toolbelt/0.9.1 tqdm/4.62.2 CPython/3.9.6

File hashes

Hashes for pyopenms-2.7.0-cp37-cp37m-win_amd64.whl
Algorithm Hash digest
SHA256 eb649eae80b1c479c445a764db6439b7d2b2b74c00bfbbd0aba7ea7158e4ffaf
MD5 4d5dacfabfe920aa610c860a05404d40
BLAKE2b-256 ea9a47d77710cac259f17fe389255e2559aa1a4e9be26d987cc88646007f8113

See more details on using hashes here.

File details

Details for the file pyopenms-2.7.0-cp37-cp37m-manylinux2014_x86_64.whl.

File metadata

  • Download URL: pyopenms-2.7.0-cp37-cp37m-manylinux2014_x86_64.whl
  • Upload date:
  • Size: 49.0 MB
  • Tags: CPython 3.7m
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/3.4.2 importlib_metadata/4.6.4 pkginfo/1.7.1 requests/2.26.0 requests-toolbelt/0.9.1 tqdm/4.62.2 CPython/3.9.6

File hashes

Hashes for pyopenms-2.7.0-cp37-cp37m-manylinux2014_x86_64.whl
Algorithm Hash digest
SHA256 9fbbd695b62d07ad2cdbde7aaeb3a131e6fdf73872e71b9f1406a131a1fb3a4b
MD5 9e48bac98a327c107e1aa4d492e7f9d2
BLAKE2b-256 73c030773af15189293e59b2ed2b725a6dbbfc9d8d85173ab50c9829c284dbd9

See more details on using hashes here.

File details

Details for the file pyopenms-2.7.0-cp37-cp37m-macosx_10_15_x86_64.whl.

File metadata

  • Download URL: pyopenms-2.7.0-cp37-cp37m-macosx_10_15_x86_64.whl
  • Upload date:
  • Size: 52.7 MB
  • Tags: CPython 3.7m, macOS 10.15+ x86-64
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/3.4.2 importlib_metadata/4.6.4 pkginfo/1.7.1 requests/2.26.0 requests-toolbelt/0.9.1 tqdm/4.62.2 CPython/3.9.6

File hashes

Hashes for pyopenms-2.7.0-cp37-cp37m-macosx_10_15_x86_64.whl
Algorithm Hash digest
SHA256 946f3952e3f8f7e64e0c6afa08cf0b014d1f256924006da5fffc21adb367d0c3
MD5 4ca348571da234fb049e8aeb187dff1e
BLAKE2b-256 06a9135cf92ce92d47ca0370c866e8aa5a3644ac9586a7b0125fd9def44a9118

See more details on using hashes here.

File details

Details for the file pyopenms-2.7.0-cp37-cp37m-macosx_10_9_x86_64.whl.

File metadata

  • Download URL: pyopenms-2.7.0-cp37-cp37m-macosx_10_9_x86_64.whl
  • Upload date:
  • Size: 52.3 MB
  • Tags: CPython 3.7m, macOS 10.9+ x86-64
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/3.4.2 importlib_metadata/4.8.1 pkginfo/1.7.1 requests/2.26.0 requests-toolbelt/0.9.1 tqdm/4.62.2 CPython/3.9.7

File hashes

Hashes for pyopenms-2.7.0-cp37-cp37m-macosx_10_9_x86_64.whl
Algorithm Hash digest
SHA256 c0a9db4c489a4f1fd3223a0c5795a9bc9321d44a79f6db6a3a7b18c1c30bdbf4
MD5 33d69d87ebdf86b0c19516915b465112
BLAKE2b-256 5bf48c65ab07728d0037905abd29c080e77ba3865cef8dffe008b7765c416392

See more details on using hashes here.

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page