pyovf 0.2.1

Reading and writing binary OVF files for mumax3 or OOMMF.

pyOVF

PyOVF is a Python3 package for reading and writing binary OVF files (mumax3 or OOMMF) using the python connector provided by the OVF RW project (which is not open-source yet).

Installation

Use the package manager pip to install pyovf.

pip install pyovf

This package is also available in this private GitLab instance and can be installed using the --extra-index-url parameter.

pip install pyovf --extra-index-url https://gitlab.flavio.be/api/v4/projects/16/packages/pypi/simple

This library relies on the compiled C++ code from OVF RW project. The compiled versions are the following:

• Linux (x86_64) | python {3.7, 3.8, 3.9, 3.10} (Ubuntu 20.04)

• macOS (darwin, intel) | python {3.7, 3.8, 3.9, 3.10} (Catalina)

As far as the main operating systems are concerned, the following are not available yet:

• Windows (any)

• Linux (armv7l, ARM arch64)

Usage

import pyovf as OVF
import numpy as np

print(f'pyOVF version: {OVF.__version__}')

#* Create a (2, 2, 2, 3) ndarray representing a fictive vector field
data_in = np.array([[[[1.1, 1.2, 1.3],   # vector @ z-comp 0, y-comp 0, x-comp 0
                      [1.4, 1.5, 1.6]],  # vector @ z-comp 0, y-comp 0, x-comp 1
                     [[2.1, 2.2, 2.3],   # vector @ z-comp 0, y-comp 1, x-comp 0
                      [2.4, 2.5, 2.6]]], # vector @ z-comp 0, y-comp 1, x-comp 1
                    [[[3.1, 3.2, 3.3],   # vector @ z-comp 1, y-comp 0, x-comp 0
                      [3.4, 3.5, 3.6]],  # vector @ z-comp 1, y-comp 0, x-comp 1
                     [[4.1, 4.2, 4.3],   # vector @ z-comp 1, y-comp 1, x-comp 0
                      [4.4, 4.5, 4.6]]], # vector @ z-comp 1, y-comp 1, x-comp 1
                   ], dtype=np.float32)

#* Writes data_in into file
OVF.write('test.ovf', data_in, title="J", Xlim=[0,10e-9],
                Ylim=[0,10e-9], Zlim=[0,10e-9])

#* Reads data and meshgrid (X, Y) from file
X, Y, data_out = OVF.read('test.ovf')
#?INFO output format => data_out[z-comp, y-comp, x-comp, vect-comp]
#?INFO vect-comp = 0 for scalar field data (geam, etc.)
#?INFO vect-comp = {0, 1, 2} for scalar field data (m, B_ext, etc.)
print(data_out.shape)

#? Checks if the data elements correspond
if (data_in == data_out.squeeze()).all():
    print('Test passed!')

#* Reads data (only) from file
data_out2 = OVF.read_data_only('test.ovf')
#?INFO read_data_only applies squeeze(), so z-comp may desappear
#?INFO if data is scalar field, the vect-comp also desappears
print(data_out2.shape)

#? Checks if the data elements correspond
if (data_in == data_out2).all():
    print('Test passed!')

Contributing

Pull requests are welcome.

License

MIT