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Pypairix is a Python module for fast querying on a pairix-indexed bgzipped text file that contains a pair of genomic coordinates per line. Input file : bgzipped text file, first sorted by two chromosome columns and then by the first position column. The file should accompany an index file (.px2) created with pairix (https://github.com/4dn-dcic/pairix). Pypairix works with Python >=2.7. Dependency: python-devel (python-dev for ubuntu), zlib (zlib1g-dev for ubuntu) if not already installed. Please reference the README for more information (https://github.com/4dn-dcic/pairix/blob/master/README.md)

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pypairix-0.1.4.tar.gz (50.7 kB) Copy SHA256 hash SHA256 Source None Apr 21, 2017

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