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Bootstrap particle filter for epidemic forecasting

Project Description


This package implements a bootstrap particle filter, intended for use with mechanistic infection models to generate forecasts for epidemic outbreaks.


The documentation is available online and can be built locally with sphinx:

python build_sphinx

Note that the sphinx_rtd_theme theme must be installed.


The code is distributed under the terms of the BSD 3-Clause license (see LICENSE), and the documentation is distributed under the terms of the Creative Commons BY-SA 4.0 license.


Clone this repository and execute:

python install

If you don’t have admin rights, install the package locally:

python install --user


This package requires h5py 2.2 or newer, NumPy 1.8 or newer, and SciPy 0.11 or newer.

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File Name & Checksum SHA256 Checksum Help Version File Type Upload Date
pypfilt-0.5.4-py2.py3-none-any.whl (52.0 kB) Copy SHA256 Checksum SHA256 py2.py3 Wheel Oct 26, 2017

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