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Bootstrap particle filter for epidemic forecasting

Project description


This package implements a bootstrap particle filter, intended for use with mechanistic infection models to generate forecasts for epidemic outbreaks.


The documentation is available online and can be built locally with sphinx:

python build_sphinx

Note that the sphinx_rtd_theme theme must be installed.


The code is distributed under the terms of the BSD 3-Clause license (see LICENSE), and the documentation is distributed under the terms of the Creative Commons BY-SA 4.0 license.


Clone this repository and execute:

python install

If you don’t have admin rights, install the package locally:

python install --user


This package requires h5py 2.2 or newer, NumPy 1.8 or newer, and SciPy 0.11 or newer.

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Files for pypfilt, version 0.5.5
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Filename, size pypfilt-0.5.5-py2.py3-none-any.whl (52.2 kB) File type Wheel Python version py2.py3 Upload date Hashes View

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