pyPhase is an open-source Python package for phase retrieval from phase contrast images in the Fresnel regime. For an overview, check out the pyPhase manuscript: https://arxiv.org/abs/2012.07942
Features
Phase retrieval algorithms
Wave propagation.
Handling of different image sources and formats
Tools for pre-processing such as registration of phase contrast images and motion estimation
Version
The latest version of PyPhase is 2.0 (the one we recommend using)
- 2.0
works on Python 3.12
includes more algorithms : CTF_HOM, RAAR, HPR, NLCG, IRGN, NLPDHGM, GDTV, PDHGM_CTF et ADMM_CTF
no longer need to install Elastix; it is automatically integrated with a Python package (itk-elastix)
- 1.0
works on Python 3.7
requires manual installation of Elastix 4.9
Installation
Installation is currently through PyPI. Create a virtual environment using your favourite virtual environment manager, verify that pip is installed, then:
pip install pyphaseTest your installation:
python3 import pyphase
Release files for pyphase 2.0.1
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| pyphase-2.0.1.tar.gz | 77.7 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| pyphase-2.0.1-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 162.8 kB
Release files / pyphase-2.0.1.tar.gz
| Download URL | pyphase-2.0.1.tar.gz |
|---|---|
| Size | 77.7 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
4da3acaafd7f33fd9964feef144438fd82ad545a0725356fbc806e7654d2a80d
|
|
BLAKE2b-256 checksum How to use checksums |
1fc0040d81d2b20440ce7970a8831a0e226184a5036c817af74a0fbed06ac267
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/7.0.0 CPython/3.14.6
|
Release files / pyphase-2.0.1-py3-none-any.whl
| Download URL | pyphase-2.0.1-py3-none-any.whl |
|---|---|
| Size | 85.1 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
69652fc0fb6fd7dc8f08699b6c71dd50577ad97a73dc51a17997f6d839d5a2ac
|
|
BLAKE2b-256 checksum How to use checksums |
d682cfe4b4e97ecf0fae51915a345a9e9e8a7e9c2c7195d41a37d3004e7ddcb2
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/7.0.0 CPython/3.14.6
|
